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Table 1 Summary of motif matches in the different PAR-CLIP datasets

From: PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data

  Number of motif matches Total nucleotides Signal-to-noise Number of interaction sites with motif/Total number of interaction sites
Argonaute (top 20 expressed miRNAs)     
   PARalyzer 3,933 207,334 2.68 3,041/11,353
   Hafner et al. (CCRs) 4,106 301,227 1.92 3,090/6,796
   Background (3' UTRs) 131,741 18,602,068 - -
PUM2     
   PARalyzer 1,262 127,168 60.28 1,344/6,990
   Hafner et al. 1,371 200,228 41.59 1,290/5,668
   Background 113,478 689,309,457 - -
QKI     
   PARalyzer 3,001 155,237 19.19 2,771/5,361
   Hafner et al. 2,593 127,201 20.24 2,079/3,903
   Background 694,229 689,309,457 - -
IGF2BP1     
   PARalyzer 31,507 1,718,152 1.35 24,758/55,831
   Hafner et al. 51,429 3,739,750 1.01 32,303/59,784
   Background 9,343,410 689,309,457 - -
  1. The Argonaute results are specific to only the 3' UTR region and contain only non-redundant seed matches. Summary of the motif matches for Pumilio2 (PUM2), Quaking (QKI), and Insulin-like growth factor 2 binding protein 1 (IGF2BP1) were generated from the analysis of the full transcript of all genes, including 5' UTRs, 3' UTRs, introns and coding regions. The Hafner et al. [7] crosslink-centered regions (CCRs) are those provided in their manuscript.