Table 5 Comparisons of TopHat-Fusion and deFuse for SKBR3 and MCF7 cell lines
From: TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
| Â | Â | Â | TopHat-Fusion | deFuse | ||
|---|---|---|---|---|---|---|
Sample ID | Fusion genes (left-right) | Chromosomes (left-right) | Spanning reads | Spanning pairs | Spanning reads | Spanning pairs |
SKBR3 | TATDN1-GSDMB | 8-17 | 311 | 555 | 322 | 95 |
SKBR3 | RARA-PKIA | 17-8 | 1 | 5 | 1 | 4 |
SKBR3 | ANKHD1-PCDH1 | 5-5 | 4 | 15 | 5 | 11 |
SKBR3 | CCDC85C-SETD3 | 14-14 | 5 | 6 | 6 | 3 |
SKBR3 | SUMF1-LRRFIP2 | 3-3 | 3 | 12 | 5 | 12 |
SKBR3 | WDR67-ZNF704 | 8-8 | 3 | 3 | 3 | 2 |
SKBR3 | CYTH1-EIF3H | 17-8 | 18 | 37 | 16 | 27 |
MCF7 | BCAS4-BCAS3 | 20-17 | 105 | 284 | 106 | 105 |
MCF7 | ARFGEF2-SULF2 | 20-20 | 17 | 20 | 17 | 12 |
MCF7 | RPS6KB1-TMEM49 | 17-17 | 4 | 3 | 6 | 2 |