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Table 3 Differentially expressed kinase transcripts by SAGE

From: The minimal kinome of Giardia lamblia illuminates early kinase evolution and unique parasite biology

ORF Group Family Subfamily Orthology Catalytically active? SAGE cluster R Maximum percentage × 1,000
92498 Other Nek Nek-Unclassified 1:1:1 Active Cysts and excyzoites 9.56 38.5
17625 CMGC GSK   1:1:1 Active Cysts and excyzoites 8.30 43.4
8350 Other Nek Nek-Unclassified 1:1:1 Active Cysts and excyzoites 9.10 44
14835 Other Nek Nek-Unclassified 1:1:1 Inactive Cysts and excyzoites 13.68 44
11364 AGC Akt   1:1:1 Active Cysts and excyzoites 10.05 63.2
15397 CMGC CDK CDC2 1:1:1 Active Cysts and excyzoites 9.46 71.5
8805 Other SCY1   1:1:1 Inactive Cysts and excyzoites 13.93 74.3
17578 Other Nek Nek-Unclassified 1:1:1 Inactive Cysts and excyzoites 13.67 77
91451 Other Nek Nek-Unclassified 1:1:1 Active Cysts and excyzoites 19.69 87.9
95593 Other Nek Nek-GL2 1:1:1 Active Cysts and excyzoites 16.11 92.9
3957 Other Nek Nek-Unclassified 1:1:1 Active Cysts and excyzoites 25.71 109.9
114307 Other Nek Nek-GL1 1:1:1 Active Cysts and excyzoites 24.87 111.5
22451 Other Nek Nek-Unclassified 1:1:1 Inactive Cysts and excyzoites 44.93 255.6
113456 Other VPS15   1:1:1 Active Differentiation 9.40 75.2
101307 Other Nek Nek-GL1 3:1:1 Active Trophozoites and encyzoites 10.11 37.8
86934_mod Other Nek Nek-GL1 3:1:1 Active Trophozoites and encyzoites 10.11 37.8
16943 Other Nek Nek-Unclassified 1:1:1 Inactive Trophozoites and encyzoites 11.98 39.7
3677 Other Nek Nek-GL4 1:1:1 Active Trophozoites and encyzoites 10.31 54
113030 Other Nek Nek-GL4 1:1:1 Inactive Trophozoites and encyzoites 10.14 59.9
5346 Other Nek Nek-Unclassified 1:1:1 Active Trophozoites and encyzoites 10.59 75.6
101534 Other Nek Nek-GL4 C Active Trophozoites and encyzoites 18.41 75.6
16824 Other Nek Nek-Unclassified 1:1:1 Inactive Trophozoites and encyzoites 8.76 81.5
90343 Other WNK   1:1:1 Active Trophozoites and encyzoites 11.42 105.2
114495_mod Other Nek Nek-GL4 C Pseudogene Trophozoites and encyzoites 27.04 174.5
24321 Other Nek Nek-Unclassified 1:1:1 Inactive Trophozoites and encyzoites 36.42 213.2
15409 Other Nek Nek-Unclassified 1:0:2 Inactive Trophozoites and encyzoites 35.87 507.4
  1. R is a measure of differential expression, with R = 8 used as a cutoff. Max percentage is the percentage of all SAGE tags belonging to this transcript at its maximum level. ORFs 101307 and 86934_mod are almost identical and share the same SAGE tags. Orthology is the number of orthologous kinases in WB:GS:P15; C means a complex ratio.