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Table 5 Summary of parameter estimates and significance levels of the multivariate generalized linear regression analysis for CpH transition rate

From: Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

 

Dataset A

Dataset B

Dataset C

 

Estimate

-log10(p)

Estimate

-log10(p)

Estimate

-log10(p)

Divergence

0.2559

> 15.70

0.2205

> 15.70

0.2094

> 15.70

Methylation level

0

0

0.0036

1.34

0.0032

0.52

GC content

-0.1366

> 15.70

-0.1389

> 15.70

-0.1681

> 15.70

Transcription level

0.0084

3.08

0.0065

6.09

0.0063

1.59

Female recombination rate

0.0048

1.15

0.0002

0.04

0.0019

0.27

Male recombination rate

0.0083

2.71

0.0046

2.91

0.0014

0.19

Explained deviance

10,790

24,947

6,639

Residual deviance

7,407

12,664

2,427

na

13,038

21,636

3,871

AICb

60,968

113,273

21,181

  1. Dataset A contains no CpG islands (CGIs) or DNase I hypersensitive sites (DHSs)), dataset B contains DHSs but no CGIs, and dataset C contains both CGIs and DHSs. aSample size. bAkaike Information Criterion.