From: BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation
Database | Concept 1 | Relation | Concept 2 | Literature references | Number of relations |
---|---|---|---|---|---|
BioGRID [25] | Gene/protein | PPI | Gene/protein | Yes | 29,566 |
CTD [26] | Compound | Association | Gene/protein | Yes | 62,336 |
 | Compound | Association | Disease | Yes | 5,438 |
 | Gene/protein | Association | Disease | Yes | 8,123 |
DIP [27] | Gene/protein | PPI | Gene/protein | Yes | 1,524 |
GOA [28] | Gene/protein | Annotation | Gene Ontology term | No | 26,949 |
HPRD [29] | Gene/protein | PPI | Gene/protein | Yes | 149,036 |
IntAct [30] | Gene/protein | PPI | Gene/protein | Yes | 37,258 |
InterPro [31] | Gene/protein | Contains | Protein domain/repeat/region | No | 26,652 |
 | Gene/protein | Is member of | Gene family | No | 22,988 |
 | Gene/gene family/protein domain/repeat/region | Annotation | Gene Ontology term | No | 18,446 |
KEGG [32] | Gene/protein | Is part of | Pathway | No | 14,100 |
 | Gene/protein | Has metabolite | Compound | No | 19,073 |
MeSH [33] | Disease | Belongs to | Disease (family) | No | 21,282 |
MINT [34] | Gene/protein | PPI | Gene/protein | Yes | 11,389 |
miR2Disease [35] | MicroRNA | Targets | Gene | Yes | 2,615 |
 | MicroRNA | Association | Disease | Yes | 344 |
NetworKIN [36] | Gene/protein | Phosphorylates | Gene/protein | No | 2,811 |
OMIM Morbid Map [11] | Gene/protein | Association | Disease | Yes | 6,199 |
OMIM [11] | Disease | Is related to | Disease | Yes | 2,467 |
TarBase [37] | MicroRNA | Targets | Gene | No | 858 |