Table 1 Statistics of small RNA sequences from the individual libraries
| Â | UNM (%) | BCP (%) | TCP (%) | Callus (%) | Leaf (%) | Root (%) |
|---|---|---|---|---|---|---|
Total reads | 6,450,464 (100) | 13,497,446 (100) | 14,952,272 (100) | 14,009,265 (100) | 13,636,372 (100) | 12,663,429 (100) |
High quality readsa | 5,982,567 (92.75) | 12,037,307 (89.18) | 13,573,834 (90.78) | 12,447,058 (88.85) | 12,323,660 (90.37) | 11,328,710 (89.46) |
Sequences of 18 to 30 nucleotidesa | 5,513,740 (85.48) | 10,256,852 (75.99) | 12,212,973 (81.68) | 10,884,533 (77.70) | 10,777,375 (79.03) | 10,424,066 (82.32) |
Sequences matched to the genomeb | 4,415,708 (80.09) | 8,857,467 (86.36) | 10,855,875 (88.89) | 9,007,545 (82.76) | 9,576,588 (88.86) | 8,563,670 (82.15) |
rRNA etc.b | 3,302,769 (59.90) | 6,424,472 (62.64) | 10,721,753 (87.79) | 6,752,856 (62.04) | 8,556,637 (79.39) | 7,154,132 (68.63) |
Exon_antisenseb | 31,248 (0.57) | 56,456 (0.55) | 15,122 (0.12) | 42,744 (0.39) | 22,426 (0.21) | 18,385 (0.18) |
Exon_senseb | 317,700 (5.76) | 343,714 (3.35) | 374,377 (3.07) | 144,997 (1.33) | 294,639 (2.73) | 164,069 (1.57) |
Intron_antisenseb | 12,444 (0.23) | 34,657 (0.34) | 5,858 (0.05) | 34,376 (0.32) | 10,330 (0.10) | 16,897 (0.16) |
Intron_senseb | 24,045 (0.44) | 13,997 (0.14) | 13,105 (0.11) | 42,672 (0.39) | 31,089 (0.29) | 26,438 (0.25) |
Kn-miRsb | 34,930 (0.63) | 73,567 (0.72) | 23,574 (0.19) | 920,584 (8.46) | 438,823 (4.07) | 383,694 (3.68) |
Repeat-associated small RNAsb | 651,296 (11.81) | 1,665,020 (16.23) | 177,549 (1.45) | 1,113,638 (10.23) | 428,592 (3.98) | 912,267 (8.75) |
Un-annotated small RNAsb | 1,139,308 (20.66) | 1,644,969 (16.04) | 881,635 (7.22) | 1,832,666 (16.84) | 994,839 (9.23) | 1,748,184 (16.77) |