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Table 9 Number of PFAM domains that are enriched among paralogous genes in non-syntenic areas

From: Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma

  T. reesei T. virens T. atroviride
Zn2Cys6 transcription factors 9 95 69
WD40 domains 1 11 14
Sugar transporters 0 18 13
Proteases 2 28 23
Cytochrome P450 7 40 15
NmrA-domains 2 19 21
Major facilitator superfamily 7 52 60
HET domains 3 26 27
Glycoside hydrolases 3 33 26
FAD-binding proteins 2 28 24
Ankyrins 4 44 37
Alcohol dehydrogenases 4 51 71
α/ß-fold hydrolases 2 26 15
ABC transporters 4 14 3
Number of genes 50 485 418
Total gene number in NS areas 92 686 1012
  1. Boxed numbers are those that are significantly (p < 0.05) different from the two other species when related to the genome size. PFAM, protein family; NS, non-syntenic; HET, heteroincompatibility.