Table 1 Summary of trans-spliced and permuted tRNAs
From: Discovery of permuted and recently split transfer RNAs in Archaea
| Â | Â | Â | 5' half of tRNA | 3' half of tRNA | Â | Â | ||
|---|---|---|---|---|---|---|---|---|
Organism | tRNA isotype | Anticodon | 5' Start | Size (bp) Pre/Mature | 5' Start | Size (bp) Pre/Mature | Ligation site | Intron position |
*Aeropyrum pernix | Asp | GUC | 372080 (+) | ~67/40 | 372241 (+) | ~58/35 | 37/38 | Â |
*Thermosphaera aggregans | Asp | GUC | 41001 (+) | ~53/40 | 41160 (-) | ~53/35 | 37/38 | Â |
*Staphylothermus hellenicus | Lys | CUU | 1095046 (+) | ~48/31 | 1090266 (+) | ~65/43 | 30/31 | Â |
*Staphylothermus marinus | Lys | CUU | 1279876 (-) | ~48/31 | 1284654 (-) | ~65/43 | 30/31 | Â |
Nanoarchaeum equitans | Lys | CUU | 308963 (+) | ~44/32 | 380370 (-) | ~60/43 | 30/31 | Â |
| Â | Gln | UUG | 419223 (-) | ~49/33 | 356559 (+) | ~61/40 | 32/33 | Â |
| Â | Glu | CUC | 331758 (-) | ~56/40 | 487064 (-) | ~56/35 | 37/38 | Â |
| Â | Glu | UUC | 436673 (-) | ~56/40 | 487064 (-) | ~5635 | 37/38 | Â |
| Â | His | GUG | 221794 (+) | ~49/37 | 409246 (+) | ~53/36 | 37/38 | Â |
| Â | iMet | CAU | 35249 (+) | ~53/39 | 3254 (+) | ~5236 | 37/38 | Â |
*Thermofilum pendens | iMet | CAU | 539254 (-) | ~89/75 | 539278 (-) | ~43/17 | 59/60 | 37/38 |
| Â | Tyr | GUA | 892743 (+) | ~128/117 | 892725 (+) | ~34/17 | 59/60 | 37/38 |
Cyanidioschyzon merolae | Ala | UGC | chr6:137501 (-) | ~63/58 | chr6:137523 (-) | ~32/14 | 59/60 | Â |
| Â | Arg | CCU | chr10:636110 (+) | ~88/85 | chr10:636073 (+) | ~47/14 | 59/60 | 14/15 |
| Â | Lys | UUU | chr16:809263 (-) | ~60/57 | chr16:809315 (-) | ~70/14 | 59/60 | Â |