From: A vertebrate case study of the quality of assemblies derived from next-generation sequences
Metric | Reference | 454/Newbler | Illumina/SOAP |
---|---|---|---|
Q20 coverage (×) | 6.1 | 11.1 | 68.6 |
N50 contig (kbp) | 45 | 16 | 12 |
N50 supercontig (kbp) | 11,000 | 584 | 314 |
BAC coverage (%) | 98.4 | 96.0 | 95.6 |
Gene coverage (%) | 97.7 | 93.0 | 93.5 |
Substitution rate (%) | 0.0174 | 0.0179 | 0.0073 |
Deletion rate (%) | 0.0009 | 0.034 | 0.0005 |
Insertion rate (%) | 0.0012 | 0.0049 | 0.0002 |