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Table 1 Multi-mapping reads. Approximate proportion of reads mapping to multiple Ensembl transcripts or genes in human using 37 bp single-end or paired-end data obtained from HapMap individuals.

From: Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

  37 bp single-end 37 bp paired-end
Multiple transcripts 78% 73%
Multiple genes 20% 10%