Figure 6

Primary and secondary DNA binding site motifs. (a) Different categories of TFs with two distinct modes of binding DNA. (b) Scatter plot of GOMER scores for regions bound in vivo by Sko1, according to the primary versus the secondary Sko1 DNA binding site motifs. Regions that score highly according to the primary but not the secondary motifs are shown in red. Regions that score highly according to the secondary but not the primary motifs are shown in blue. (c) Gene Ontology (GO) categories enriched in the regions that score highly according to the primary but not the secondary Sko1 motif. (d) GO categories enriched in the regions that score highly according to the secondary but not the primary Sko1 motif. See main text and Additional file 1 for details.