Figure 1

Selecting DNA binding site motifs for our curated collection. (a) The in vitro motifs for TF Cin5 are very similar, but not equally enriched in the ChIP-chip data (see main text). (b) The Cst6 in vitro motif reported by Badis et al. [10] is a truncated version of the Cst6 motif reported in this study. The latter better matches TGACGTCA, the known site for the ATF/CREB family of bZIP TFs, of which Cst6 is a member. (c) For TF Ecm22 we selected the motif obtained in this study (which is different from the motif previously reported by Badis et al. [10]). The selected motif matches the sterol regulatory element TCGTATA, which had been reported to be bound by Ecm22 (and also its close paralog, Upc2). N/A, not available in Fordyce et al. [12].