Table 2 Genome-wide analysis of C. militaris gene sets.
Characteristics | C. militaris | CMM corea | CMA restrictedb | CMC restrictedc | CCM specific |
|---|---|---|---|---|---|
Number of genes | 9,684 | 7,981 | 217 | 158 | 1,328 |
Mean gene length (bp) | 1,742 | 1,885 | 1,445 | 1,440 | 967 |
Mean number of introns per gene | 1.99 | 2.05 | 1.77 | 1.69 | 1.71 |
Percentage genes without introns | 21.3 | 20.1 | 22.6 | 28.5 | 27.5 |
Percentage GC content (excluding introns) | 58.6 | 58.6 | 70.7 | 58.7 | 58.3 |
Number of InterproScan protein families | 2,644 | 2,552 | 69 | 52 | 112 |
Number of secreted proteins | 1,572 | 1,250 | 45 | 13 | 264 |
Number of PHI genesd | 1,547 | 1,539 | 4 | 2 | 2 |
Number of TSA proteases | 68 | 65 | 3 | 0 | 0 |
Number of MFS genes | 245 | 242 | 0 | 2 | 1 |
Number of cytochrome P450s | 57 | 56 | 0 | 1 | 0 |
Number of Pth11-like GPCRs | 18 | 18 | 0 | 0 | 0 |
Number of protein kinases | 167 | 167 | 0 | 0 | 0 |
Number of transcription factors | 123 | 120 | 2 | 1 | 0 |
Number of glycoside hydrolases | 105 | 103 | 2 | 0 | 0 |
Number of SM backbone genes | 28 | 28 | 0 | 0 | 0 |
Number of horizontally transferred genes | 49 | 30 | 5 | 1 | 12 |
Number of orthologs in M. anisopliae | 6,863 | 6,705 | 158 | NA | NA |
Number of orthologs in M. acridum | 6,762 | 6,644 | NA | 118 | NA |
Number of orthologs in F. graminearum | 6,740 | 6,376 | 106 | 89 | 169 |
Number of orthologs in M. oryzae | 6,219 | 5,937 | 90 | 80 | 112 |
Percentage identity to M. anisopliae orthologs | 63.4 | 63.7 | 51.3 | NA | NA |
Percentage identity to M. acridum orthologs | 63.4 | 63.6 | NA | 51.2 | NA |
Percentage identity to F. graminearum orthologs | 61.6 | 62.3 | 51.9 | 52.8 | 46.7 |
Percentage identity to M. oryzae orthologs | 56.0 | 56.4 | 48.3 | 48.0 | 45.3 |