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Table 1 Summary of the C.sinensis genome assembly

From: The draft genome of the carcinogenic human liver fluke Clonorchis sinensis

 

Total length (Mb)

Number

N50a (bp)

N90a (bp)

Longest (bp)

Contigb

515.56

60,796

14,708

4,079

137,874

Scaffoldb

516.46

31,822

30,195

7,299

238,094

Super-scaffoldb

516.47

26,446

42,632

8,441

400,764

  1. aThe N50 and N90 sizes of contigs or scaffolds were calculated by ordering all sequences and then adding the lengths from the longest to the shortest until the summed length exceeded 50% and 90% of the total length of all sequences, respectively. bContigs and scaffolds were constructed by Celera, while contigs were continuous sequence fragment without gaps (Ns). Super-scaffolds were built with RNA-seq data by RNAPATH based on the scaffolds.