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Table 1 Microarray experiments performed with R.leguminosarum biovar viciae Rlv3841

From: Adaptation of Rhizobium leguminosarumto pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

Array Express accession numbera Condition 1 Condition 2 Biological replicates Results shown
E-MEXP-2844 Pyruvate/NH4+/hesperetin (1 μM) Pyruvate/NH4+ 3 Additional file 6
E-MEXP-2846 Pea root exudate Pyruvate/NH4+ 3 Additional file 6
E-MEXP-2845 21 day pea rhizosphere 1 dpi Glucose/NH4+ 4 Additional file 6
E-MEXP-2845 14 day pea rhizosphere 1 dpi Glucose/NH4+ 4 Additional file 6
E-MEXP-2845, E-MEXP-2848 7 day pea rhizosphere 1 dpi Glucose/NH4+ 5 Additional file 6
E-MEXP-2848 7 day pea rhizosphere 3 dpi Glucose/NH4+ 5 Additional file 6
E-MEXP-2848, E-MEXP-2852, E-MEXP-2854 7 day pea rhizosphere 7 dpi Glucose/NH4+ 5 Additional file 7
E-MEXP-2852 7 day alfalfa rhizosphere 7 dpi Glucose/NH4+ 3 Additional file 7
E-MEXP-2852 7 day sugar beet rhizosphere 7 dpi Glucose/NH4+ 3 Additional file 7
E-MEXP-2849 7 day pea rhizosphere 7 dpi 7 day alfalfa rhizosphere 7 dpi 4 Additional file 6
E-MEXP-2849 7 day pea rhizosphere 7 dpi 7 day sugar beet rhizosphere 7 dpi 4 Additional file 6
E-MEXP-2849 7 day alfalfa rhizosphere 7 dpi 7 day sugar beet rhizosphere 7 dpi 4 Additional file 6
E-MEXP-2854 7 day pea rhizosphere 7 dpi inoculated with 103 CFU Glucose/NH4+ 3 Additional file 6
E-MEXP-2857 Formate/pyruvate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 Protocatechuate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 4-Hydroxybenzoate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 Phenylalanine/pyruvate/NH4+ Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 Proline/pyruvate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 N-limited (glucose/1 mM NH4+) Glucose/10 mM NH4+ 1 Additional file 9
E-MEXP-2857 L-Arabinose/NH4+ Glucose/NH4+ 1 Additional file 9
E-MEXP-2857 Galactose/NH4+ Glucose/NH4+ 1 Additional file 9
E-MEXP-2857 Arabinogalactan/pyruvate/NH4+ Pyruvate/NH4+ 1 Additional file 9
  1. Microarrays comparing growth on acetate, acetoacetate, inositol, succinate, glucose and pyruvate as carbon sources have been published previously [8]. All carbon sources were 10 mM, except pyruvate (30 mM), protocatechuate (3 mM), 4-hydroxybenzoate (3 mM), phenylalanine (5 mM), formate (40 mM) and arabinogalactan (10 mg/ml). aWhere two or more accession numbers are given they form part of different time courses. Inoculation of all rhizospheres was performed with 108 CFU unless otherwise stated.