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Table 1 Microarray experiments performed with R.leguminosarum biovar viciae Rlv3841

From: Adaptation of Rhizobium leguminosarumto pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

Array Express accession numbera

Condition 1

Condition 2

Biological replicates

Results shown

E-MEXP-2844

Pyruvate/NH4+/hesperetin (1 μM)

Pyruvate/NH4+

3

Additional file 6

E-MEXP-2846

Pea root exudate

Pyruvate/NH4+

3

Additional file 6

E-MEXP-2845

21 day pea rhizosphere 1 dpi

Glucose/NH4+

4

Additional file 6

E-MEXP-2845

14 day pea rhizosphere 1 dpi

Glucose/NH4+

4

Additional file 6

E-MEXP-2845, E-MEXP-2848

7 day pea rhizosphere 1 dpi

Glucose/NH4+

5

Additional file 6

E-MEXP-2848

7 day pea rhizosphere 3 dpi

Glucose/NH4+

5

Additional file 6

E-MEXP-2848, E-MEXP-2852, E-MEXP-2854

7 day pea rhizosphere 7 dpi

Glucose/NH4+

5

Additional file 7

E-MEXP-2852

7 day alfalfa rhizosphere 7 dpi

Glucose/NH4+

3

Additional file 7

E-MEXP-2852

7 day sugar beet rhizosphere 7 dpi

Glucose/NH4+

3

Additional file 7

E-MEXP-2849

7 day pea rhizosphere 7 dpi

7 day alfalfa rhizosphere 7 dpi

4

Additional file 6

E-MEXP-2849

7 day pea rhizosphere 7 dpi

7 day sugar beet rhizosphere 7 dpi

4

Additional file 6

E-MEXP-2849

7 day alfalfa rhizosphere 7 dpi

7 day sugar beet rhizosphere 7 dpi

4

Additional file 6

E-MEXP-2854

7 day pea rhizosphere 7 dpi inoculated with 103 CFU

Glucose/NH4+

3

Additional file 6

E-MEXP-2857

Formate/pyruvate

Pyruvate/NH4+

1

Additional file 9

E-MEXP-2857

Protocatechuate

Pyruvate/NH4+

1

Additional file 9

E-MEXP-2857

4-Hydroxybenzoate

Pyruvate/NH4+

1

Additional file 9

E-MEXP-2857

Phenylalanine/pyruvate/NH4+

Pyruvate/NH4+

1

Additional file 9

E-MEXP-2857

Proline/pyruvate

Pyruvate/NH4+

1

Additional file 9

E-MEXP-2857

N-limited (glucose/1 mM NH4+)

Glucose/10 mM NH4+

1

Additional file 9

E-MEXP-2857

L-Arabinose/NH4+

Glucose/NH4+

1

Additional file 9

E-MEXP-2857

Galactose/NH4+

Glucose/NH4+

1

Additional file 9

E-MEXP-2857

Arabinogalactan/pyruvate/NH4+

Pyruvate/NH4+

1

Additional file 9

  1. Microarrays comparing growth on acetate, acetoacetate, inositol, succinate, glucose and pyruvate as carbon sources have been published previously [8]. All carbon sources were 10 mM, except pyruvate (30 mM), protocatechuate (3 mM), 4-hydroxybenzoate (3 mM), phenylalanine (5 mM), formate (40 mM) and arabinogalactan (10 mg/ml). aWhere two or more accession numbers are given they form part of different time courses. Inoculation of all rhizospheres was performed with 108 CFU unless otherwise stated.