Skip to main content

Table 1 Microarray experiments performed with R.leguminosarum biovar viciae Rlv3841

From: Adaptation of Rhizobium leguminosarumto pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics

Array Express accession numbera Condition 1 Condition 2 Biological replicates Results shown
E-MEXP-2844 Pyruvate/NH4+/hesperetin (1 μM) Pyruvate/NH4+ 3 Additional file 6
E-MEXP-2846 Pea root exudate Pyruvate/NH4+ 3 Additional file 6
E-MEXP-2845 21 day pea rhizosphere 1 dpi Glucose/NH4+ 4 Additional file 6
E-MEXP-2845 14 day pea rhizosphere 1 dpi Glucose/NH4+ 4 Additional file 6
E-MEXP-2845, E-MEXP-2848 7 day pea rhizosphere 1 dpi Glucose/NH4+ 5 Additional file 6
E-MEXP-2848 7 day pea rhizosphere 3 dpi Glucose/NH4+ 5 Additional file 6
E-MEXP-2848, E-MEXP-2852, E-MEXP-2854 7 day pea rhizosphere 7 dpi Glucose/NH4+ 5 Additional file 7
E-MEXP-2852 7 day alfalfa rhizosphere 7 dpi Glucose/NH4+ 3 Additional file 7
E-MEXP-2852 7 day sugar beet rhizosphere 7 dpi Glucose/NH4+ 3 Additional file 7
E-MEXP-2849 7 day pea rhizosphere 7 dpi 7 day alfalfa rhizosphere 7 dpi 4 Additional file 6
E-MEXP-2849 7 day pea rhizosphere 7 dpi 7 day sugar beet rhizosphere 7 dpi 4 Additional file 6
E-MEXP-2849 7 day alfalfa rhizosphere 7 dpi 7 day sugar beet rhizosphere 7 dpi 4 Additional file 6
E-MEXP-2854 7 day pea rhizosphere 7 dpi inoculated with 103 CFU Glucose/NH4+ 3 Additional file 6
E-MEXP-2857 Formate/pyruvate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 Protocatechuate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 4-Hydroxybenzoate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 Phenylalanine/pyruvate/NH4+ Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 Proline/pyruvate Pyruvate/NH4+ 1 Additional file 9
E-MEXP-2857 N-limited (glucose/1 mM NH4+) Glucose/10 mM NH4+ 1 Additional file 9
E-MEXP-2857 L-Arabinose/NH4+ Glucose/NH4+ 1 Additional file 9
E-MEXP-2857 Galactose/NH4+ Glucose/NH4+ 1 Additional file 9
E-MEXP-2857 Arabinogalactan/pyruvate/NH4+ Pyruvate/NH4+ 1 Additional file 9
  1. Microarrays comparing growth on acetate, acetoacetate, inositol, succinate, glucose and pyruvate as carbon sources have been published previously [8]. All carbon sources were 10 mM, except pyruvate (30 mM), protocatechuate (3 mM), 4-hydroxybenzoate (3 mM), phenylalanine (5 mM), formate (40 mM) and arabinogalactan (10 mg/ml). aWhere two or more accession numbers are given they form part of different time courses. Inoculation of all rhizospheres was performed with 108 CFU unless otherwise stated.
Back to article page

Genome Biology

ISSN: 1474-760X

Contact us