|
Library
| |
ABySS a)
| | |
Inchworm a)
| |
|---|
| |
N50 (kb)
|
Max (kb) b)
|
Total (Mb) c)
|
N50 (kb)
|
Max (kb) b)
|
Total (Mb) c)
|
|---|
|
PK-Mid-flower
|
0.73
|
6.55
|
19.9
|
1.36
|
7.42
|
26.5
|
|
PK-Early-flower
|
0.64
|
4.94
|
16.7
|
1.06
|
6.11
|
24.0
|
|
PK-Pre-flower
|
0.80
|
6.74
|
21.4
|
1.56
|
7.89
|
28.0
|
|
PK-Shoot
|
0.69
|
6.16
|
20.2
|
1.34
|
7.41
|
26.8
|
|
PK-Stem
|
0.80
|
6.55
|
22.9
|
1.67
|
11.55
|
29.3
|
|
PK-Root
|
0.43
|
4.03
|
15.3
|
0.64
|
7.21
|
22.5
|
|
PK-tissue-all
|
0.62
|
8.74
|
26.7
|
-
|
-
|
-
|
|
PK-normalized1
|
-
|
-
|
-
|
1.78
|
10.96
|
31.1
|
|
PK-normalized2
|
-
|
-
|
-
|
1.72
|
7.89
|
34.2
|
|
PK-normalized3
|
-
|
-
|
-
|
1.84
|
8.19
|
34.7
|
|
PK-normalized4
|
-
|
-
|
-
|
1.71
|
7.10
|
32.1
|
|
PK-normalized-all
|
1.18
|
7.31
|
42.1
|
-
|
-
|
-
|
|
Library
| |
Combined
| | | | |
| |
N50 (kb)
|
Max (kb)
|
Total (Mb)
| | | |
|
Non-redundant
|
1.65
|
11.55
|
49.4
| | | |
|
Cap3 overlap merging
|
1.80
|
12.11
|
41.0
| | | |
- a) Fields marked with '-' indicate library/assembly combinations that were not analyzed. Statistics are shown for transcripts that passed initial QC and that could be oriented according to coding strand.
- b) Size of largest transcript in the assembly
- c) Total number of non-gap bases in the assembly
