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Table 1 Key to abbreviations used for methods tested

From: Multi-species integrative biclustering

 

Expression only

Full data

 

Shared space

Full genome (elaboration)

Shared space

Full genome (elaboration)

Multi-species

    

   cMonkey

EO-MSCM-SH

EO-MSCM-EL

FD-MSCM-SH

FD-MSCM-EL

   ISA

MSISA-P

MSISA-R

NA

NA

   k-means

MSKM-SH

MSKM-EL

NA

NA

   (Balanced) k-means

BMSKM-SH

BMSKM-EL

NA

NA

Single-species

    

   cMonkey

EO-SSCM

FD-SSCM

   Coalesce

EO-COAL

FD-COAL

   Qubic

QUBIC

NA

  1. Tested methods are shown organized by main method (multi-species or single-species), data types used, and whether the analysis was performed over the full genome or restricted to only genes with orthologs across the species analyzed. ISA, Iterative Signature Algorithm; EO, expression only; MSCM, multi-species cMonkey; SH, shared biclusters; MSISA, multi-species ISA; P, purified biclusters; MSKM, multi-species k-means; BMSKM, balanced multi-species k-means; EL, elaborated biclusters; R, refined biclusters, applies only to the ISA algorithm (MSISA-R); FD, full data; SSCM, single-species cMonkey; COAL, Coalesce biclustering method; QUBIC, QUalitative BIClustering algorithm.