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Table 1 Key to abbreviations used for methods tested

From: Multi-species integrative biclustering

  Expression only Full data
  Shared space Full genome (elaboration) Shared space Full genome (elaboration)
Multi-species     
   cMonkey EO-MSCM-SH EO-MSCM-EL FD-MSCM-SH FD-MSCM-EL
   ISA MSISA-P MSISA-R NA NA
   k-means MSKM-SH MSKM-EL NA NA
   (Balanced) k-means BMSKM-SH BMSKM-EL NA NA
Single-species     
   cMonkey EO-SSCM FD-SSCM
   Coalesce EO-COAL FD-COAL
   Qubic QUBIC NA
  1. Tested methods are shown organized by main method (multi-species or single-species), data types used, and whether the analysis was performed over the full genome or restricted to only genes with orthologs across the species analyzed. ISA, Iterative Signature Algorithm; EO, expression only; MSCM, multi-species cMonkey; SH, shared biclusters; MSISA, multi-species ISA; P, purified biclusters; MSKM, multi-species k-means; BMSKM, balanced multi-species k-means; EL, elaborated biclusters; R, refined biclusters, applies only to the ISA algorithm (MSISA-R); FD, full data; SSCM, single-species cMonkey; COAL, Coalesce biclustering method; QUBIC, QUalitative BIClustering algorithm.