Table 1 Relating mRNA decay to gene function
From: Genome-wide analysis of mRNA decay patterns during early Drosophiladevelopment
GO term | P-value |
|---|---|
Cellular component | Â |
   Replication fork | 2.38E-06 |
   Nuclear chromosome | 5.18E-05 |
   Nuclear chromosome part | 6.91E-05 |
   Chromosome | 4.95E-04 |
   Microtubule organizing centre part | 1.78E-03 |
   Replisome | 1.96E-03 |
   Nuclear replisome | 1.96E-03 |
   Nuclear replication fork | 1.96E-03 |
   Endoplasmic reticulum membrane | 2.77E-03 |
   Nuclear envelope-endoplasmic reticulum network | 3.35E-03 |
   Endomembrane system | 4.43E-03 |
   Rough endoplasmic reticulum membrane | 9.11E-03 |
Gene function | Â |
   Rough endoplasmic reticulum membrane | 9.11E-03 |
   Transferase activity | 4.13E-11 |
   Lipid binding | 4.88E-06 |
   Zinc ion binding | 1.37E-05 |
   Cofactor binding | 2.37E-05 |
   Nucleoside-triphosphatase activity | 3.97E-05 |
   DNA-dependent ATPase activity | 4.66E-05 |
   Pyrophosphatase activity | 8.22E-05 |
   Metal ion binding | 8.64E-05 |
   DNA-directed DNA polymerase activity | 1.09E-04 |
   Cation binding | 1.14E-04 |
   Ion binding | 1.18E-04 |
   Aminoacyl-tRNA ligase activity | 1.18E-04 |
   Ligase activity, forming aminoacyl-tRNA and related compounds | 1.18E-04 |
   Ligase activity, forming carbon-oxygen bonds | 1.18E-04 |
   Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.21E-04 |
   Transferase activity, transferring phosphorus-containing groups | 2.20E-04 |
   Hydrolase activity, acting on acid anhydrides | 2.40E-04 |
   DNA polymerase activity | 2.94E-04 |
   DNA binding | 3.42E-04 |
   Ligase activity | 6.84E-04 |
   Transition metal ion binding | 1.28E-03 |
   ATPase activity | 2.13E-03 |
   Nucleotidyltransferase activity | 3.77E-03 |
   Phosphoinositide binding | 6.49E-03 |
   DNA helicase activity | 6.87E-03 |
   Coenzyme binding | 7.56E-03 |
Biological process | Â |
   DNA metabolic process | 3.34E-13 |
   Cellular ketone metabolic process | 1.19E-11 |
   Oxoacid metabolic process | 3.59E-11 |
   Organic acid metabolic process | 3.59E-11 |
   Carboxylic acid metabolic process | 3.59E-11 |
   DNA replication | 7.52E-10 |
   Macromolecule localization | 8.71E-07 |
   Cellular localization | 1.35E-06 |
   Cellular response to stress | 1.44E-06 |
   Cellular response to stimulus | 2.09E-06 |
   Cellular amine metabolic process | 3.25E-06 |
   Cellular amino acid metabolic process | 3.25E-06 |
   Cellular macromolecule localization | 8.09E-06 |
   Cellular response to DNA damage stimulus | 1.00E-05 |
   Response to DNA damage stimulus | 2.21E-05 |
   Response to stress | 7.37E-05 |
   Cellular carbohydrate metabolic process | 1.20E-04 |
   DNA repair | 1.43E-04 |
   Cofactor metabolic process | 2.09E-04 |
   Cellular amino acid and derivative metabolic process | 2.14E-04 |
   Localization | 2.24E-04 |
   Establishment of protein localization | 2.52E-04 |
   Protein transport | 3.45E-04 |
   Regulation of cellular component organization | 3.67E-04 |
   Cellular catabolic process | 3.77E-04 |
   Establishment of localization | 8.90E-04 |
   tRNA aminoacylation for protein translation | 1.69E-03 |
   tRNA aminoacylation | 1.69E-03 |
   Regulation of cell cycle | 1.69E-03 |
   Amino acid activation | 2.11E-03 |
   Organelle fission | 2.67E-03 |
   Establishment of localization in cell | 3.75E-03 |
   DNA-dependent DNA replication | 3.84E-03 |
   ncRNA metabolic process | 5.46E-03 |
   Pyruvate metabolic process | 5.86E-03 |
   Transport | 7.27E-03 |
   Monocarboxylic acid metabolic process | 8.38E-03 |
   Anatomical structure formation | 8.67E-03 |