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Table 2 Top 20 most highly expressed cDNAs across all the libraries, and their presence in different genomes

From: Digital expression profiling of novel diatom transcripts provides insight into their biological functions

Contig Cluster sizea Gb BLASTX description InterPro description
G49202 2,079 P - -
G55010 856 P - Pyridoxal phosphate-dependent decarboxylase
G47667 833 O Solute carrier family 34 Na+/Pi cotransporter
G27877 658 O Ammonium transporter Rh-like protein/ammonium transporter
G13951 630 C Glutamate dehydrogenase Glutamate dehydrogenase
G51797 613 D Alpha 3 frustulin -
G52619 605 O Uric acid-xanthine permease Xanthine/uracil/vitamin C permease
G44694 586 D M6 family Aldehyde dehydrogenase
G20424 561 O Urea active isoform Na+/solute symporter
G48027 545 P - -
G48315 479 V Choline carnitine betaine transporter BCCT transporter
G176.1 463 O Alternative oxidase Alternative oxidase
G29456 379 C Glyceraldehyde-3- phosphate dehydrogenase Glyceraldehyde 3-phosphate dehydrogenase
G49064 358 H - Na+/H+ antiporter NhaC
G49151 353 D Nucleoside diphosphate epimerase NmrA-like
G49211 346 P - -
C358 344 V Periplasmic l-amino acid catalytic subunit -
G30648 342 V Light harvesting protein Chlorophyll A-B binding protein
G23629 333 C Calcium transporting ATPase E1-E2 ATPase-associated region
G45835 316 V - Sterol-sensing 5TM box
  1. aCluster size of contig. bConserved in different representatives from eukaryotic genomes (e-value cutoff 10-5; more than 30% identity and 50% coverage): C, core (plant/animal/diatom); D, diatom (P. tricornutum and T. pseudonana); O, animal (opisthokonts); P, Phaeodactylum tricornutum; V, plant (Viridiplantae).