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Table 2 Summary of targets controlled by SBF

From: The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycle

Ranking Systematic name Standard name Cell cycle peaka TF bindingb Motifs CRCGAAc Previous classificationsd Functional classe
1 YER001W MNN1 29 [16-18] 1 (1) [22,23,36-38] CW Gly
2 YNL300W TOS6 30 [15-18] 4 [22,23,35-38] Unknown
3 YKR013W PRY2 25 [16-18] 4 [22,23,35,36,38] Unknown
4 YOL007C CSI2 24 [15] 4 [22,36] CW Gly
5 YPL163C SVS1 28 [15-18] 3 (1) [22,23,35-38] Others
6 YPL256C CLN2 23 [15] 2 (2) [23,35,36] DNA RRR/BP
7 YDR297W SUR2 30 [15] 1 [23] Others
8 YMR307W GAS1 36 [15-18] 2 (1) [22,23,36-38] CW Gly
9 YDR507C GIN4 21 [15-18] 1 [23,37,38] BP
10 YLR183C TOS4 23 [15] 2 (1) [22,36] Others
16 YOL019W   22 [15,17] 1 [36-38] Unknown
17 YGR140W CBF2 34 [15] 1 (2)   Cell cycle
18 YNL031C HHT2 37 [15] 2 [36] DNA CM
32 YJL173C RFA3 31   1 (1)   DNA RRR
39 YMR144W   33 [16-18] 1 [35-38] Unknown
49 YMR179W SPT21 14 [15-18] 1 [35-38] Others
51 YPL267W ACM1 16 [17,18] 1 [35-38] Unknown
54 YLR121C YPS3 17 [15] 2 [36] Others
57 YNL278W CAF120 nd [15] 2   Others
61 YHR154W RTT107 24   1 [36] DNA RRR
63 YMR304C-A   nd [16-18] 0   Unknown
65 YHR173C   36   1   Unknown
67 YBL009W ALK2 36   2   Others
69 YJL080C SCP160 33   2   Cell cycle
70 YKR090W PXL1 27   1   BP
71 YGL093W SPC105 34   1   Cytoskeleton
72 YKL113C RAD27 20   1 [36] DNA RRR
73 YBR088C POL30 20   1 [36] DNA RRR
76 YGL225W VRG4 38   2 (1)   CW Gly
77 YDR113C PDS1 33   0   Cell cycle
79 YLR383W SMC6 24   1   DNA RRR
81 YGL012W ERG4 42 [15] 1   Others
84 YPL032C SVL3 40   1   BP
85 YHR050W SMF2 nd   1 (1)   Others
86 YKL049C CSE4 40   1   Cell cycle
87 YBR252W DUT1 40   1   Others
88 YOR099W KTR1 34   1 (1)   CW Gly
89 YLL021W SPA2 31   0 (1)   BP
91 YNL102W POL1 20   0 (1) [36] DNA RRR
92 YJR144W MGM101 nd   3 (1)   DNA RRR
93 YLR045C STU2 42   3 (1) [36] SPB
94 YAL007C ERP2 37   1   Others
  1. aPercent value of the whole duration of the cell cycle taken from [20, 45]. bReferences for publications where Swi4 binding was detected. cNumber of motifs in the first 400 bp upstream of the TSS (motifs beyond the first 400 bp upstream). dReferences for publications where the gene was predicted as target of SBF. eCW Gly, cell wall/glycosylation; DNA RRR, DNA replication, recombination and repair; BP, budding/polarity; SPB, spindle pole body; DNA CM, DNA conformation modification. The top ten predicted targets and all those specific (not detected in [22] or [23]) to our classification are shown. The full list is available in Additional file 3. ND, not determined.