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Table 1 Summary of targets controlled by MBF

From: The transcriptional network activated by Cln3 cyclin at the G1-to-S transition of the yeast cell cycle

Ranking Systematic name Standard name Cell cycle peaka TF bindingb Motifs ACGCGc Previous classificationsd Functional classe
1 YMR179W SPT21 14 [15-18] 2 (1) [23,35-38] Others
2 YKL113C RAD27 20 [15-18] 1 (1) [23, 35-38] DNA RRR
3 YLR103C CDC45 18 [15-18] 2 [22, 23, 35-38] DNA RRR
4 YNL102W POL1 20 [15,18] 3 (1) [22,23,36] DNA RRR
5 YJL074C SMC3 19 [17,18] 2 [22,23,35-38] Cell cycle
6 YOR074C CDC21 22 [15-18] 2 [22,23,35-38] DNA RRR
7 YNL312W RFA2 22 [15,17,18] 2 [22,23,36,37] DNA RRR
8 YAR007C RFA1 19 [17,18] 2 (1) [22,23,36-38] DNA RRR
9 YAR008W SEN34 17 [17,18] 2 (2) [22,23,36-38] Others
10 YDL003W MCD1 20 [15-18] 2 (2) [23,35-38] Cell cycle
41 YNL082W PMS1 13   2   DNA RRR
56 YOR144C ELG1 16   1   DNA RRR
66 YKL092C BUD2 ND   1   BP
67 YDL157C   32   1   Unknown
68 YNL206C RTT106 19   1   DNA RRR
69 YKL108W SLD2 13   1   DNA RRR
70 YOR284W HUA2 17   1   BP
71 YDL164C CDC9 18   2 [36] DNA RRR
72 YLR032W RAD5 15   2   DNA RRR
77 YDL102W POL3 17   1 (1)   DNA RRR
78 YNL263C YIF1 24   1 (1)   Others
79 YPL208W RKM1 23   1   Others
83 YKL042W SPC42 21   1   SPB
84 YML133C   8 [15] (1)   DNA RRR
85 YJL173C RFA3 31   2 (1) [36] DNA RRR
86 YJL181W   13   3   Unknown
88 YKL089W MIF2 ND    [36] SPB
89 YML060W OGG1 22   1   DNA RRR
90 YBR275C RIF1 22 [18]    DNA CM
91 YOR368W RAD17 ND   1   DNA RRR
95 YNL339C YRF1-6 10 [15] (1)   DNA RRR
96 YOL090W MSH2 20   1 [36] DNA RRR
99 YOR114W   24   1   Unknown
101 YHL013C OTU2 ND [17]   [35,37] Unknown
103 YOR195W SLK19 27   1   SPB
104 YGR140W CBF2 34   1 (1)   Cell cycle
106 YNL309W STB1 15   1 (1)   Cell cycle
107 YOL034W SMC5 ND   1   DNA RRR
108 YER016W BIM1 29   2   Cytoskeleton
109 YDR356W SPC110 33   1   Cytoskeleton
110 YDL105W NSE4 16     DNA RRR
111 YNL088W TOP2 34   2   DNA CM
  1. aPercent value of the whole duration of the cell cycle taken from [20, 45]. bReferences for publications where Mbp1 binding was detected. cNumber of motifs in the first 200 bp upstream of the TSS (motifs beyond the first 200 bp upstream). dReferences for publications where the gene was predicted as target of MBF. eDNA RRR, DNA replication, recombination and repair; BP, budding/polarity; SPB, spindle pole body; DNA CM, DNA conformation modification. The top ten predicted targets and all those specific (not detected in [22] or [23]) to our classification are shown. The full list is available in Additional file 3. ND, not determined.