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Table 1 Distribution of introns and intron-containing genes in the E150 genome

From: Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts

   

Intron-containing genes (I-genes) with:

  

Chromosome

Genes

Pseudo-genes

1 intron

2 introns

3 introns

4 introns

5 introns

Total I-genes

Total introns

YALI0A

686

32

66 (6)

8

0

0

0

74 (6)

82 (6)

YALI0B

949

14

138 (6)

17

2

1

0

158 (6)

182 (6)

YALI0C

932

30

133 (6)

11 (1)

3

0

1

148 (7)

169 (8)

YALI0D

1,101

29

131 (6)

20

1

1

0

153 (6)

178 (6)

YALI0E

1,464

12

177 (4)

18

1

0

0

196 (4)

216 (4)

YALI0F

1,317

20

197 (2)

19 (2)

4

1

1

222 (4)

256 (6)

Genome

6,449

137

842 (29)

93 (3)

11

3

2

951 (33)

1,083 (36)

  1. Introns were detected in 5' UTRs. The number of 5' UTR introns or of genes containing 5' UTR introns is indicated in parentheses.