Table 2 Alignment statistics for SOLiD frag sequencing libraries
| Â | SOLiD library | |||
|---|---|---|---|---|
| Â | 1 | 2 | 3 | 4 |
Total reads aligned | 199,704,874 | 53,558,797 | 47,640,266 | 46,687,848 |
Total data aligned (Gbp) | 9.99 | 2.68 | 2.38 | 2.33 |
Reads on target (%) | 50.1 | 50.9 | 49.5 | 48.0 |
Duplicate reads (%) | 32.8 | 22.1 | 22.5 | 20.9 |
Mean coverage (X)a | 43 | 22 | 20 | 19 |
Median coverage (X)a | 42 | 19 | 16 | 15 |
Targets hit (%) | 99.3 | 98.44 | 98.4 | 98.1 |
Bases ≥1× coverage (%) | 97.6 | 94.31 | 93.5 | 92.5 |
Bases ≥10× coverage (%)a | 89.4 | 70.8 | 65.9 | 64.1 |
Bases ≥20× coverage (%)a | 78.9 | 48.2 | 42.0 | 40.5 |