Figure 3

Agreement between the non-redundant set of Venter CNVs and genotype-validated variable loci. The agreement between sites identified by different detection methods was measured by the percentage of reciprocal overlap between the estimated size for the non-redundant set of Venter variants and the estimated size for the CNVs generated and genotyped in the Genome Structural Variation (GSV) population genetics study [19]. Two sites were considered overlapping if the reciprocal overlap among their estimated sizes was ≥ 50%. The lower right corner plot summarizes the mean discrepancy between Venter and GSV loci sizes, as a proportion of the GSV-estimated CNV size.