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Table 3 Average fold changes of genes, exons, and junctions of chromosome 1

From: Modeling non-uniformity in short-read rates in RNA-Seq data

  Average fold changes of mean sequencing preferences
Dataset used to train the model Genes Exons Junctions (read length = 35) Junctions (read length = 100)
Wold 1.02 1.12 1.13 1.07
Burge 1.18 1.32 1.37 1.28
Grimmond 1.25 2.17 2.34 1.73