Modeling non-uniformity in short-read rates in RNA-Seq data

Table 2 R² in different datasets

		R ²
		Poisson linear			MART
Dataset	Sub-dataset	80 nucleotides^a, non-cross-validation	80 nucleotides^a, cross-validation	40 nucleotides^a, cross-validation	40 nucleotides^a, cross-validation
Wold	Brain	0.52	0.51	0.51	0.70
	Liver	0.51	0.50	0.50	0.70
	Muscle	0.48	0.46	0.46	0.59
Burge	Group 1	0.43	0.42	0.42	0.52
	Group 2	0.37	0.35	0.35	0.46
	Group 3	0.45	0.42	0.42	0.54
Grimmond	EB	0.47	0.40	0.40	0.58
	ES	0.45	0.39	0.37	0.54

ISSN: 1474-760X