From: The origin and early evolution of eukaryotes in the light of phylogenomics
System/complex/function | Inferred origins | References |
---|---|---|
DNA replication and repair machinery | Archaeal, with either crenarchaeotal or euryarchaeotal affinities for DNA polymerases and other central replication proteins; a mix of archaeal and bacterial for repair enzymes | |
Transcription machinery | Archaeal; at least two RNA polymerase subunits of crenarchaeotal/korarchaeotal origin | |
Translation apparatus, including ribosomes | Mostly archaeal; some aminoacyl-tRNA synthetases displaced with bacterial homologs | |
Cell division and membrane remodeling systems; phagocytosis | Primarily archaeal (Crenarchaeota) but some key regulators like Ras superfamily GTPases of bacterial origin | |
Cytoskeleton | Primarily archaeal; euryarchaeal affinity for tubulin, crenarchaeotal for actin | |
Proteasome: regulated proteolysis | Archaeal | [110] |
Ubiquitin signaling: regulated proteolysis and protein topogenesis | Archaeal but origin of some essential components, such as E2 and E3 ubiquitin ligases, uncertain | |
Exosome: regulated RNA degradation | Archaeal | [132] |
Nuclear pore complex: nucleocytosolic transport | Bacterial; some key proteins of the nuclear pore complex repetitive and of uncertain origin | [28] |
Chromatin/nucleosomes | Complex mix of archaeal and bacterial | [66] |
RNA interference | Hybrid of archaeal and bacterial | |
Endomembrane system/endoplasmic reticulum | Complex mix of archaeal and bacterial | |
Mitochondrion/electron transfer chain | Bacterial |