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Table 2 Splice junctions and insertions reported by SplitSeek with anchor length 22

From: Global and unbiased detection of splice junctions from RNA-seq data

  Oocyte 1 Oocyte 2 Oocyte 1+2
Number processed reads 11,565,660 23,488,851 35,054,511
Predicted splice junctions 17,397 23,703 31,532
Within chromosome 16,205 (93.1%) 21,495 (90.7%) 27,957 (88.7%)
Within 1 Mb 16,128 (92.7%) 21,374 (90.2%) 27,757 (88.0%)
Within 100 kb 16,094 (92.5%) 21,323 (90.0%) 27,685 (87.8%)
Match to a RefSeq exon-exon boundarya 14,264 (82.0%) 18,139 (76.5%) 23,235 (73.7%)
Expected false within 1 Mb (FDR) 12.9 (8.0·10-4) 17.6 (8.2·10-4) 23.4 (8.4·10-4)
Expected false within 100 kb (FDR) 1.3 (8.0·10-5) 1.8 (8.2·10-5) 2.3 (8.4·10-5)
Predicted insertions 275 553 834
  1. aEach of the exon boundaries located within 5 bp of predicted junction.