Table 1 Number of genes called differentially expressed between liver and kidney at a false discovery rate <0.001 using different normalization methods
From: A scaling normalization method for differential expression analysis of RNA-seq data
| Â | Library size normalization | TMM normalization | Overlap |
|---|---|---|---|
   Higher in liver | 2,355 | 4,293 | 2,355 |
   Higher in kidney | 8,332 | 4,935 | 4,935 |
   Total | 10,867 | 9,228 | 7,290 |
House keeping genes (545) | Â | Â | Â |
   Higher in liver | 45 | 137 | 45 |
   Higher in kidney | 376 | 220 | 220 |
   Total | 421 | 357 | 265 |