Skip to main content

Table 1 Number of genes called differentially expressed between liver and kidney at a false discovery rate <0.001 using different normalization methods

From: A scaling normalization method for differential expression analysis of RNA-seq data

  Library size normalization TMM normalization Overlap
   Higher in liver 2,355 4,293 2,355
   Higher in kidney 8,332 4,935 4,935
   Total 10,867 9,228 7,290
House keeping genes (545)    
   Higher in liver 45 137 45
   Higher in kidney 376 220 220
   Total 421 357 265
  1. TMM, trimmed mean of M values.