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Table 4 Contribution of individual structural variant callers to the 'SVMerge final' call set for NA18506

From: Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly

  Unique SV calls   
  Deletion Insertion Inversion CNG Shared SV calls Total SVs
BDMax 3,283 45 124 - 442 3,874
Pindel 25 0 - - 404 429
SECluster - 449 - - 40 489
RetroSeq - 44 - - 7 51
RDXplorer 526 - - 280 49 855
  1. Shown are the number of structural variant (SV) calls (>100 bp) from each SV caller that are included in the 'final' call set for NA18506. 'Unique SV calls' are those that are made by a single SV caller only, and 'Shared SV calls' are SVs that were found by more than one method. 'BDMax' is BreakDancerMax. CNG, copy number gain.