Homoeolog-specific retention and use in allotetraploid Arabidopsis suecica depends on parent of origin and network partners

Table 4 Gene Ontology annotations for homoeolog-biased use (expression) in Arabidopsis suecica transcriptome, overrepresented unless stated

Classification	Biological process	P-value
At-like	One-carbon metabolic process	6.1e-05
	Intracellular protein transport	0.00012
	Macromolecule localization	0.00012
	Microtubule-based movement	0.00045
	Cytoskeleton-dependent intracellular transport	0.00045
	Protein complex assembly	0.0030
	Cellular component organization	0.0039
	Cytoskeleton organization and biogenesis	0.0039
	Photorespiration	0.0053
	Seryl-tRNA aminoacylation	0.0069
	Aspartate family amino acid metabolic process	0.0071
	mRNA metabolic process	0.011
	Response to drug, underrepresented	0.020
	Drug transport, underrepresented	0.020
	Pyrimidine base metabolic process	0.024
	Phosphate transport	0.024
	Inflammatory response	0.024
Aa-like	Oxidative phosphorylation	0.0013
	ATP synthesis coupled electron transport	0.0024
	Programmed cell death	0.0028
	Cell development	0.0043
	Glycerol metabolic process	0.0058
	Alcohol metabolic process	0.0058
	Hormone metabolic process	0.0058
	Phagocytosis	0.0081
	Endocytosis	0.0081
	Hormone catabolic process	0.012
	Photomorphogenesis	0.014
	tRNA metabolic process, underrepresented	0.017
	Transcription	0.023
	Nuclear transport	0.031
	Regulation of cell cycle	0.034
	RNA polyadenylation	0.034

ISSN: 1474-760X