| |
Number of SNPs
|
|---|
|
SNP
|
Blue catfish
|
Channel catfish
|
All catfish
|
|---|
|
Putative
| | | |
|
Transitions
|
29,305
|
61,184
|
172,746
|
|
Transversions
|
19,397
|
41,068
|
130,254
|
|
Total SNPs
|
48,702
|
102,252
|
303,000
|
|
Indels
|
14,803
|
41,660
|
100,636
|
|
SNP rate (kb)
|
3.2
|
4.1
|
7.7
|
|
Filtered putative
| | | |
|
Transitions
|
2,886
|
11,012
|
32,235
|
|
Transversions
|
1,005
|
4,815
|
16,359
|
|
Total SNPs
|
3,891
|
15,827
|
48,594
|
|
Indels
|
1,070
|
6,707
|
19,398
|
|
Filtered/Non-filtered rate
|
7.8%
|
15.7%
|
16.2%
|
|
SNP rate* (kb)
|
0.25
|
0.64
|
1.6
|
- *SNP rate was calculated by dividing the total number of SNPs excluding indels by the total length (bp) of the consensus sequences of the contigs.
