Skip to main content

Table 1 cDNA library information and sequencing summary

From: Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies

Library Species Nature of library Organ, tissue, or cell line Total sequences
CBFH Blue catfish Normalized Stomach, muscle, olfactory tissue and trunk kidney 37,314
CBZC Blue catfish Normalized Stomach, muscle, olfactory tissue and trunk kidney 30,902
CBNH Blue catfish Normalized Head kidney, gill, intestine, spleen, skin and liver 9,323
CBZF Blue catfish Normalized Head kidney, gill, intestine, spleen, skin and liver 51,172
Subtotal     128,711
CBCZ Channel catfish Non-normalized Mixed leukocytes of parallel blood leukocytes 16,168
CBFA Channel catfish Normalized Catfish whole fry library 63,602
CBNG Channel catfish Normalized Kidney, gill, intestine, spleen, skin and liver 2,982
CBZB Channel catfish Normalized Kidney, gill, intestine, spleen, skin and liver 57,772
CBNI Channel catfish Normalized Stomach, muscle, olfactory tissue and trunk kidney 17,023
CBZA Channel catfish Normalized Stomach, muscle, olfactory tissue and trunk kidney 61,320
CBPN Channel catfish Subtracted Liver, pituitary, ovary and testis 62,058
CBPO Channel catfish Normalized Peripheral blood leukocytes stimulated with LPS 28,685
Subtotal     309,610
NCBI Blue catfish    10,764
NCBI Channel catfish    44,767
Total     493,852
  1. Library names were designated by the Joint Genome Institute. LPS, lipopolysaccharide.