Table 4 Examples of equivalence mappings between pre-composed phenotype classes and EQ descriptions

MP

   Decreased diameter of femur

Femur

Decreased diameter

   MP:0008152

MA:0001359

PATO:0001715

   Spherocytosis

Erythrocyte

Spherical

   MP:0002812

CL:0000232

PATO:0001499

   Abnormal spleen iron level

Spleen

Concentration of

Iron

Abnormal

   MP:0008739

MA:0000141

PATO:0000033

CHEBI:18248

PATO:0000460

   Situs inversus

Visceral organ system

Inverted

   MP:0002766

MA:0000019

PATO:0000625

   Delayed kidney development

Kidney development

Delayed

   MP:0000528

GO:0001822

PATO:0000502

   Truncated notochord

TS20 notochord

Truncated

   MP:0004714

EMAP:4109

PATO:0000936

   Motor neuron degeneration

CL:0000100 motor neuron

Degenerate

   MP:0000938

PATO:0000639

   Axon degeneration

Axon

Degenerate

   MP:0005405

GO:0030424

PATO:0000639

   Loss of basal ganglion neurons

Basal ganglia

Has fewer parts of type

Neuron

   MP:0003242

MA:0000184

PATO:0002001

CL:0000540

   Abnormal Purkinje cell dendrite morphology

Dendrite of Purkinje cell

Morphology

Abnormal

   MP:0008572

GO:0030425^part_of(CL:0000121)

PATO:0000051

PATO:0000460

HP

   Hypoplastic uterus

Uterus

Hypoplastic

   HP:0000013

FMA:17558

PATO:0000645

   Abnormality of vision

Visual perception

Quality

Abnormal

   HP:0000504

GO:0007601

PATO:0000001

PATO:0000460

   Narrow pelvis

Pelvis

Decreased width

   HP:0003275

FMA:9578

PATO:0000599

WP

   Shruken intestine

Intestine

Shrunken

   WBPhenotype:0000086

WBbt:0005772

PATO:0000585

TO

   Leaf area

Leaf

Area

   TO:0000540

PO:0009025

PATO:0001323

   Auxin sensitivity

Whole plant

Sensitivity

Auxin

   TO:000163

PO:0000003

PATO:0000085

CHEBI:22676