Table 1 Topological parameters of the inferred transcription network of A. thaliana
Parameter | Value |
|---|---|
Clustering coefficient | 0.319 |
Network diameter | 13 |
Characteristic path length | 5.065 |
Number of connected genes | 18,169 |
Number of regulations inferred | 128,422 |
Network density | 7.78 × 10-4 |
Constitutive genes | 3,952 (17.89%) |
Genes regulated by one TF | 3,111 (14.08%) |
Genes regulated by two TFs | 2,352 (10.64%) |
Genes regulated by three TFs | 1,966 (8.90%) |
Genes regulated by four TFs | 1,606 (7.27%) |
Genes regulated by five TFs | 1,393 (6.30%) |
Genes regulated by more than five TFs | 7,714 (34.91%) |