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Table 2 Full-length L1 elements identified by 3' expression tag analysis

From: Many LINE1 elements contribute to the transcriptome of human somatic cells

Chromosome band Sub-family Genome coordinates (hg18) ORF1, ORF2 Tag count In intron of gene, +/- dbRIP ID [16] Identified by 5' expression tag, count
1p21.1 L1HS chr1:105187979-105194009 -, - 1 No   
1q25.2 L1PA2 chr1:177073306-177079473 -, - 3 No   
1q44 L1PA3 chr1:246757382-246763965 -, - 2 No   Yes, 3
1p31.1 L1PA2 chr1:83588685-83594736 -, - 1 No   
1p22.3 L1HS chr1:86917352-86923382 Yes, Yes 1 No   
2q23.1 L1HS chr2:148662785-148668812 Yes, - 1 Yes, +   
2p24.3 L1HS chr2:16638475-16644507 Yes, Yes 1 Yes, +   
2q31.1 L1HS chr2:169813380-169819412 Yes, - 4 Yes, -   
2q31.3 L1HS chr2:181406634-181412661 -, Yes 3 No   
2q34 L1HS chr2:214140201-214146231 Yes, - 5 Yes, -   
2q37.1 L1HS chr2:232722151-232728183 -, - 1 Yes, -   Yes, 1
2p16.2 L1PA3 chr2:53667675-53673685 Yes, - 1 No*   
2p13.3 L1HS chr2:71492113-71498139 Yes, - 2 Yes, -   
3q12.2 L1PA3 chr3:101711142-101717175 -, - 1 Yes, +   
3q13.32 L1PA2 chr3:120115781-120121808 -, - 1 Yes, -   
3q13.33 L1PA2 chr3:123243449-123249475 Yes, - 4 No   
3p24.3 L1PA3 chr3:18992446-18998582 -, - 1 No*   
3p24.3 L1PA3 chr3:23365739-23371880 Yes, - 1 Yes, +   Yes, 71
4q27 L1HS chr4:121089330-121095361 Yes, - 2 No*   
4q31.22 L1HS chr4:145977329-145983590 -, - 1 No   
4p15.32 L1HS chr4:15452268-15458293 Yes, Yes 349 Yes, +   
4q13.1 L1PA2 chr4:64080835-64086866 -, - 6 No   Yes, 30
4q23 L1HS chr4:99732610-99738637 Yes, - 1 Yes, +   
5q23.2 L1PA3 chr5:126253878-126259924 Yes, - 4 Yes, +   
5q34 L1PA6 chr5:162571721-162577711 -, - 3 No*   
5q35.3 L1PA2 chr5:180262128-180268143 Yes, - 2 Yes, -   
5p13.3 L1HS chr5:34183708-34189893 Yes, - 1 No Druze54  
5q14.1 L1PA3 chr5:77910921-77916574 -, - 1 Yes, +   
6q22.31 L1PA5 chr6:125758770-125765089 -, - 1 No   
6p22.2 L1HS chr6:24919886-24925913 Yes, Yes 1 Yes, + AL512428| Database 29  
6q13 L1HS chr6:70776961-70783165 Yes, - 17 Yes, + L1HS169  
6q14.3 L1HS chr6:86765484-86771510 Yes, - 2 No chr6-8676  
6q15 L1PA3 chr6:88089716-88095715 -, - 1 Yes, -+   
7q31.1 L1HS chr7:110670808-110676838 Yes, Yes 5 Yes, +  
7q31.1 L1HS chr7:113203414-113209443 Yes, Yes 13 No  
7q36.1 L1PA5 chr7:149925116-149930649 -, - 17 No   
7p14.3 L1PA2 chr7:32703791-32709682 -, - 2 No*   
7p12.1 L1PA2 chr7:50934034-50940065 Yes, - 1 No*   
8p21.2 L1PA2 chr8:26309046-26315012 Yes, - 12 Yes, +   
8q21.13 L1PA2 chr8:84521933-84527959 Yes, - 4 No   
8q22.1 L1PA2 chr8:96633637-96639669 Yes, - 2 No*   
9q31.3 L1HS chr9:112593199-112599230 Yes, - 2 Yes, +   
9q21.11 L1PA2 chr9:71281844-71287865 -, - 1 Yes, -   
9q22.32 L1HS chr9:95915639-95921668 Yes, - 2 No   
10q26.12 L1PA3 chr10:122660462-122666485 -, - 2 No   Yes, 10
10p15.1 L1HS chr10:6451604-6457635 -, Yes 2 No L1HS171| Database 45  
11q22.3 L1HS chr11:108553432-108559463 Yes, Yes 1 No   Yes, 1
11p15.4 L1PA2 chr11:7635956-7641978 -, - 19 No   
12q23.3 L1PA2 chr12:105389774-105395799 Yes, - 1 Yes, -   
12q24.32 L1PA3 chr12:126916354-126922380 -, - 3 No   
12q13.13 L1HS chr12:50242683-50248708 Yes, - 2 No   
12q21.1 L1PA2 chr12:72074857-72080877 -, - 2 No   
12q23.1 L1PA2 chr12:95233852-95239880 -, - 5 Yes, -   
13q12.3 L1HS chr13:30774452-30780482 Yes, - 1 Yes, +   
13q13.3 L1PA3 chr13:36722478-36728518 -, - 2 No   
13q14.2 L1HS chr13:47937693-47943703 -, - 6 Yes, +   
13q21.32 L1PA2 chr13:67152381-67158421 -, - 4 No   
14q23.1 L1PA2 chr14:59482976-59488994 -, - 1 Yes, -   
14q31.1 L1PA3 chr14:79303855-79309939 -, - 1 Yes, +   
16q22.1 L1HS chr16:67174881-67180909 Yes, - 1 No   
20p11.21 L1HS chr20:23354746-23360777 Yes, - 2 No*   
20q13.2 L1PA2 chr20:51553798-51559820 -, - 1 No*   
22q11.22 L1PA3 chr22:20,961,183-20,967,196 -, - 1 Yes, -   
22q12.1 L1HS chr22:27389272-27395303 Yes, Yes 2 No* L1HS86| AL121825  
Xq26.1 L1PA2 chrX:129920587-129926612 Yes, - 2 No   
Xq27.2 L1HS chrX:141393302-141399320 Yes, Yes 2 No AL031586  
Xp21.3 L1PA2 chrX:28134830-28140827 -, Yes 1 No   
Xp11.22 L1PA2 chrX:49711541-49717572 Yes, - 1 Yes, +   
Xq13.2 L1PA4 chrX:73611039-73617191 -, - 1 Yes, -   
  1. *Spliced ESTs span L1. Truncated 96 amino acids from carboxyl terminus.
  2. Active (>1% L1RP) in cell culture assay [19].