Table 2 Full-length L1 elements identified by 3' expression tag analysis
From: Many LINE1 elements contribute to the transcriptome of human somatic cells
Chromosome band | Sub-family | Genome coordinates (hg18) | ORF1, ORF2 | Tag count | In intron of gene, +/- | dbRIP ID [16] | Identified by 5' expression tag, count |
|---|---|---|---|---|---|---|---|
1p21.1 | L1HS | chr1:105187979-105194009 | -, - | 1 | No | Â | Â |
1q25.2 | L1PA2 | chr1:177073306-177079473 | -, - | 3 | No | Â | Â |
1q44 | L1PA3 | chr1:246757382-246763965 | -, - | 2 | No | Â | Yes, 3 |
1p31.1 | L1PA2 | chr1:83588685-83594736 | -, - | 1 | No | Â | Â |
1p22.3 | L1HS | chr1:86917352-86923382 | Yes, Yes | 1 | No | Â | Â |
2q23.1 | L1HS | chr2:148662785-148668812 | Yes, - | 1 | Yes, + | Â | Â |
2p24.3 | L1HS | chr2:16638475-16644507 | Yes, Yes | 1 | Yes, + | Â | Â |
2q31.1 | L1HS | chr2:169813380-169819412 | Yes, - | 4 | Yes, - | Â | Â |
2q31.3 | L1HS | chr2:181406634-181412661 | -, Yes | 3 | No | Â | Â |
2q34 | L1HS | chr2:214140201-214146231 | Yes, - | 5 | Yes, - | Â | Â |
2q37.1 | L1HS | chr2:232722151-232728183 | -, - | 1 | Yes, - | Â | Yes, 1 |
2p16.2 | L1PA3 | chr2:53667675-53673685 | Yes, - | 1 | No* | Â | Â |
2p13.3 | L1HS | chr2:71492113-71498139 | Yes, - | 2 | Yes, - | Â | Â |
3q12.2 | L1PA3 | chr3:101711142-101717175 | -, - | 1 | Yes, + | Â | Â |
3q13.32 | L1PA2 | chr3:120115781-120121808 | -, - | 1 | Yes, - | Â | Â |
3q13.33 | L1PA2 | chr3:123243449-123249475 | Yes, - | 4 | No | Â | Â |
3p24.3 | L1PA3 | chr3:18992446-18998582 | -, - | 1 | No* | Â | Â |
3p24.3 | L1PA3 | chr3:23365739-23371880 | Yes, - | 1 | Yes, + | Â | Yes, 71 |
4q27 | L1HS | chr4:121089330-121095361 | Yes, - | 2 | No* | Â | Â |
4q31.22 | L1HS | chr4:145977329-145983590 | -, - | 1 | No | Â | Â |
4p15.32 | L1HS | chr4:15452268-15458293 | Yes, Yes†| 349 | Yes, + |  |  |
4q13.1 | L1PA2 | chr4:64080835-64086866 | -, - | 6 | No | Â | Yes, 30 |
4q23 | L1HS | chr4:99732610-99738637 | Yes, - | 1 | Yes, + | Â | Â |
5q23.2 | L1PA3 | chr5:126253878-126259924 | Yes, - | 4 | Yes, + | Â | Â |
5q34 | L1PA6 | chr5:162571721-162577711 | -, - | 3 | No* | Â | Â |
5q35.3 | L1PA2 | chr5:180262128-180268143 | Yes, - | 2 | Yes, - | Â | Â |
5p13.3 | L1HS | chr5:34183708-34189893 | Yes, - | 1 | No | Druze54 | Â |
5q14.1 | L1PA3 | chr5:77910921-77916574 | -, - | 1 | Yes, + | Â | Â |
6q22.31 | L1PA5 | chr6:125758770-125765089 | -, - | 1 | No | Â | Â |
6p22.2 | L1HS | chr6:24919886-24925913 | Yes, Yes | 1 | Yes, + | AL512428| Database 29‡ |  |
6q13 | L1HS | chr6:70776961-70783165 | Yes, - | 17 | Yes, + | L1HS169 | Â |
6q14.3 | L1HS | chr6:86765484-86771510 | Yes, - | 2 | No | chr6-8676 | Â |
6q15 | L1PA3 | chr6:88089716-88095715 | -, - | 1 | Yes, -+ | Â | Â |
7q31.1 | L1HS | chr7:110670808-110676838 | Yes, Yes | 5 | Yes, + | ‡ |  |
7q31.1 | L1HS | chr7:113203414-113209443 | Yes, Yes | 13 | No | ‡ |  |
7q36.1 | L1PA5 | chr7:149925116-149930649 | -, - | 17 | No | Â | Â |
7p14.3 | L1PA2 | chr7:32703791-32709682 | -, - | 2 | No* | Â | Â |
7p12.1 | L1PA2 | chr7:50934034-50940065 | Yes, - | 1 | No* | Â | Â |
8p21.2 | L1PA2 | chr8:26309046-26315012 | Yes, - | 12 | Yes, + | Â | Â |
8q21.13 | L1PA2 | chr8:84521933-84527959 | Yes, - | 4 | No | Â | Â |
8q22.1 | L1PA2 | chr8:96633637-96639669 | Yes, - | 2 | No* | Â | Â |
9q31.3 | L1HS | chr9:112593199-112599230 | Yes, - | 2 | Yes, + | Â | Â |
9q21.11 | L1PA2 | chr9:71281844-71287865 | -, - | 1 | Yes, - | Â | Â |
9q22.32 | L1HS | chr9:95915639-95921668 | Yes, - | 2 | No | Â | Â |
10q26.12 | L1PA3 | chr10:122660462-122666485 | -, - | 2 | No | Â | Yes, 10 |
10p15.1 | L1HS | chr10:6451604-6457635 | -, Yes | 2 | No | L1HS171| Database 45 | Â |
11q22.3 | L1HS | chr11:108553432-108559463 | Yes, Yes | 1 | No | Â | Yes, 1 |
11p15.4 | L1PA2 | chr11:7635956-7641978 | -, - | 19 | No | Â | Â |
12q23.3 | L1PA2 | chr12:105389774-105395799 | Yes†, - | 1 | Yes, - |  |  |
12q24.32 | L1PA3 | chr12:126916354-126922380 | -, - | 3 | No | Â | Â |
12q13.13 | L1HS | chr12:50242683-50248708 | Yes, - | 2 | No | Â | Â |
12q21.1 | L1PA2 | chr12:72074857-72080877 | -, - | 2 | No | Â | Â |
12q23.1 | L1PA2 | chr12:95233852-95239880 | -, - | 5 | Yes, - | Â | Â |
13q12.3 | L1HS | chr13:30774452-30780482 | Yes, - | 1 | Yes, + | Â | Â |
13q13.3 | L1PA3 | chr13:36722478-36728518 | -, - | 2 | No | Â | Â |
13q14.2 | L1HS | chr13:47937693-47943703 | -, - | 6 | Yes, + | Â | Â |
13q21.32 | L1PA2 | chr13:67152381-67158421 | -, - | 4 | No | Â | Â |
14q23.1 | L1PA2 | chr14:59482976-59488994 | -, - | 1 | Yes, - | Â | Â |
14q31.1 | L1PA3 | chr14:79303855-79309939 | -, - | 1 | Yes, + | Â | Â |
16q22.1 | L1HS | chr16:67174881-67180909 | Yes, - | 1 | No | Â | Â |
20p11.21 | L1HS | chr20:23354746-23360777 | Yes, - | 2 | No* | Â | Â |
20q13.2 | L1PA2 | chr20:51553798-51559820 | -, - | 1 | No* | Â | Â |
22q11.22 | L1PA3 | chr22:20,961,183-20,967,196 | -, - | 1 | Yes, - | Â | Â |
22q12.1 | L1HS | chr22:27389272-27395303 | Yes, Yes | 2 | No* | L1HS86| AL121825‡ |  |
Xq26.1 | L1PA2 | chrX:129920587-129926612 | Yes, - | 2 | No | Â | Â |
Xq27.2 | L1HS | chrX:141393302-141399320 | Yes, Yes | 2 | No | AL031586 | Â |
Xp21.3 | L1PA2 | chrX:28134830-28140827 | -, Yes | 1 | No | Â | Â |
Xp11.22 | L1PA2 | chrX:49711541-49717572 | Yes, - | 1 | Yes, + | Â | Â |
Xq13.2 | L1PA4 | chrX:73611039-73617191 | -, - | 1 | Yes, - | Â | Â |