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Table 1 Chromosome 6 P-values from ISC, MGS, SGENE and combined analysis

From: Common variants in polygenic schizophrenia

SNP Position P (ISC) P (MGS) P (SGENE) P combined Gene Distance
rs6939997* 25929203 5.66 × 10-4 1.40 × 10-1 2.85 × 10-4 4.90 × 10-7 SLC17A1 0
rs13199775* 25936761 5.66 × 10-4 5.12 × 10-2 2.57 × 10-4 1.19 × 10-7 SLC17A1 0
rs9461219* 25944906 2.68 × 10-3 4.99 × 10-2 5.52 × 10-4 4.72 × 10-7 SLC17A1 6130
rs1324087 25949387 6.30 × 10-2 4.30 × 10-2 2.90 × 10-3 6.90 × 10-5 SLC17A3 3920
rs9467626* 25981725 7.47 × 10-4 5.32 × 10-2 2.68 × 10-4 1.65 × 10-7 SLC17A3 0
rs13198474 25982402 6.00 × 10-2 9.50 × 10-2 1.30 × 10-4 2.50 × 10-5 SLC17A3 0
rs2072806* 26493072 2.80 × 10-4 5.91 × 10-3 3.40 × 10-2 9.27 × 10-7 BTN2A2 0
rs2072803* 26500494 2.80 × 10-4 5.53 × 10-3 3.23 × 10-2 8.19 × 10-7 BTN2A2 0
rs6904071* 27155235 3.00 × 10-4 1.20 × 10-2 3.70 × 10-4 1.80 × 10-8 HIST1H2BJ 45506
rs926300* 27167422 3.00 × 10-4 1.20 × 10-2 2.10 × 10-4 1.10 × 10-8 HIST1H2BJ 33319
rs7745603 27198383 - 3.00 × 10-2 6.70 × 10-4 8.70 × 10-5 HIST1H2BJ 2358
rs6913660* 27199404 3.00 × 10-4 1.70 × 10-2 3.40 × 10-4 2.40 × 10-8 HIST1H2BJ 1337
rs13219181* 27244204 3.00 × 10-4 1.50 × 10-2 2.10 × 10-4 1.30 × 10-8 HIST1H2AH 20879
rs13194053*†† 27251862 3.00 × 10-4 1.50 × 10-2 1.50 × 10-4 9.50 × 10-9 HIST1H2AH 28537
rs13219354* 27293643 5.11 × 10-4 3.59 × 10-2 4.39 × 10-4 1.12 × 10-7 PRSS16 29844
rs3800307* 27293771 3.40 × 10-3 1.30 × 10-2 6.10 × 10-5 4.40 × 10-8 PRSS16 29716
rs13212921 27313401 5.76 × 10-4 3.09 × 10-2 5.53 × 10-4 1.28 × 10-7 PRSS16 10086
rs4452638 27337244 3.96 × 10-4 4.51 × 10-2 1.11 × 10-3 2.68 × 10-7 PRSS16 5015
rs6938200 27339129 2.40 × 10-3 5.28 × 10-2 1.51 × 10-4 3.02 × 10-7 PRSS16 6900
rs6932590* 27356910 2.20 × 10-3 3.40 × 10-3 8.50 × 10-4 7.10 × 10-8 PRSS16 24681
rs3800316* 27364081 3.50 × 10-3 7.20 × 10-4 1.10 × 10-3 3.80 × 10-8 PRSS16 31852
rs7746199* 27369303 8.80 × 10-4 6.80 × 10-4 5.70 × 10-3 5.00 × 10-8 PRSS16 37074
rs3800318* 27371620 8.80 × 10-4 2.80 × 10-3 2.30 × 10-3 6.40 × 10-8 PRSS16 39391
rs16897515* 27385999 6.40 × 10-4 1.22 × 10-2 2.16 × 10-3 1.83 × 10-7 DKFZp686G2037 47582
rs13195040* 27521903 3.00 × 10-5 1.04 × 10-1 2.82 × 10-3 2.50 × 10-7 ZNF184 4603
rs10484399* 27642507 8.58 × 10-6 1.09 × 10-1 8.69 × 10-3 3.50 × 10-7 ZNF184 93644
rs17693963* 27818144 6.00 × 10-5 2.87 × 10-2 8.85 × 10-3 2.81 × 10-7 BC035101 33229
rs7776351* 27834710 1.13 × 10-4 2.83 × 10-2 6.51 × 10-3 3.22 × 10-7 HIST1H2BL 48526
rs12182446* 27853717 7.17 × 10-5 2.99 × 10-2 1.22 × 10-2 4.77 × 10-7 HIST1H2BL 29519
rs149990 28106237 5.00 × 10-4 3.80 × 10-1 2.60 × 10-3 2.60 × 10-5 ZNF165 48314
rs13211507 28365356 2.60 × 10-4 1.30 × 10-1 2.70 × 10-3 5.20 × 10-6 PGBD1 0
rs3130375 30429711 3.66 × 10-7 8.60 × 10-2 1.40 × 10-1 - RPP21 7100
rs3130544 31166319 1.30 × 10-2 3.80 × 10-1 3.30 × 10-4 8.20 × 10-5 C6orf15 20660
rs3815087 31201566 7.70 × 10-2 2.20 × 10-1 1.30 × 10-4 6.70 × 10-5 PSORS1C1 0
rs3131296# 32280971 1.30 × 10-3 1.40 × 10-1 1.10 × 10-3 9.80 × 10-6 NOTCH4 0
rs2076537 32425613 1.20 × 10-2 - 1.60 × 10-3 5.50 × 10-5 C6orf10 0
rs9272219 32710247 2.20 × 10-5 1.30 × 10-2 1.00 × 10-2 6.90 × 10-8 HLA-DQA1 2914
rs9272535 32714734 2.50 × 10-5 1.60 × 10-2 9.90 × 10-3 8.90 × 10-8 HLA-DQA1 0
  1. *Main findings of the meta-analysis. Data presented in two papers with similar values. Data presented in three papers with similar values. §SNP of most focus in MGS. SNP of most focus in ISC. #SNP of most focus in SGENE. A dash (-) indicates data not available.