Table 1 Chromosome 6 P-values from ISC, MGS, SGENE and combined analysis
SNP | Position | P (ISC) | P (MGS) | P (SGENE) | P combined | Gene | Distance |
|---|---|---|---|---|---|---|---|
rs6939997* | 25929203 | 5.66 × 10-4 | 1.40 × 10-1 | 2.85 × 10-4 | 4.90 × 10-7 | SLC17A1 | 0 |
rs13199775* | 25936761 | 5.66 × 10-4 | 5.12 × 10-2 | 2.57 × 10-4 | 1.19 × 10-7 | SLC17A1 | 0 |
rs9461219* | 25944906 | 2.68 × 10-3 | 4.99 × 10-2 | 5.52 × 10-4 | 4.72 × 10-7 | SLC17A1 | 6130 |
rs1324087 | 25949387 | 6.30 × 10-2 | 4.30 × 10-2 | 2.90 × 10-3 | 6.90 × 10-5 | SLC17A3 | 3920 |
rs9467626* | 25981725 | 7.47 × 10-4 | 5.32 × 10-2 | 2.68 × 10-4 | 1.65 × 10-7 | SLC17A3 | 0 |
rs13198474 | 25982402 | 6.00 × 10-2 | 9.50 × 10-2 | 1.30 × 10-4 | 2.50 × 10-5 | SLC17A3 | 0 |
rs2072806* | 26493072 | 2.80 × 10-4 | 5.91 × 10-3 | 3.40 × 10-2 | 9.27 × 10-7 | BTN2A2 | 0 |
rs2072803* | 26500494 | 2.80 × 10-4 | 5.53 × 10-3 | 3.23 × 10-2 | 8.19 × 10-7 | BTN2A2 | 0 |
rs6904071*†| 27155235 | 3.00 × 10-4 | 1.20 × 10-2 | 3.70 × 10-4 | 1.80 × 10-8 | HIST1H2BJ | 45506 |
rs926300*†| 27167422 | 3.00 × 10-4 | 1.20 × 10-2 | 2.10 × 10-4 | 1.10 × 10-8 | HIST1H2BJ | 33319 |
rs7745603 | 27198383 | - | 3.00 × 10-2 | 6.70 × 10-4 | 8.70 × 10-5 | HIST1H2BJ | 2358 |
rs6913660*‡ | 27199404 | 3.00 × 10-4 | 1.70 × 10-2 | 3.40 × 10-4 | 2.40 × 10-8 | HIST1H2BJ | 1337 |
rs13219181*†| 27244204 | 3.00 × 10-4 | 1.50 × 10-2 | 2.10 × 10-4 | 1.30 × 10-8 | HIST1H2AH | 20879 |
rs13194053*††| 27251862 | 3.00 × 10-4 | 1.50 × 10-2 | 1.50 × 10-4 | 9.50 × 10-9 | HIST1H2AH | 28537 |
rs13219354*†| 27293643 | 5.11 × 10-4 | 3.59 × 10-2 | 4.39 × 10-4 | 1.12 × 10-7 | PRSS16 | 29844 |
rs3800307*†| 27293771 | 3.40 × 10-3 | 1.30 × 10-2 | 6.10 × 10-5 | 4.40 × 10-8 | PRSS16 | 29716 |
rs13212921 | 27313401 | 5.76 × 10-4 | 3.09 × 10-2 | 5.53 × 10-4 | 1.28 × 10-7 | PRSS16 | 10086 |
rs4452638 | 27337244 | 3.96 × 10-4 | 4.51 × 10-2 | 1.11 × 10-3 | 2.68 × 10-7 | PRSS16 | 5015 |
rs6938200 | 27339129 | 2.40 × 10-3 | 5.28 × 10-2 | 1.51 × 10-4 | 3.02 × 10-7 | PRSS16 | 6900 |
rs6932590*‡ | 27356910 | 2.20 × 10-3 | 3.40 × 10-3 | 8.50 × 10-4 | 7.10 × 10-8 | PRSS16 | 24681 |
rs3800316*†| 27364081 | 3.50 × 10-3 | 7.20 × 10-4 | 1.10 × 10-3 | 3.80 × 10-8 | PRSS16 | 31852 |
rs7746199*†| 27369303 | 8.80 × 10-4 | 6.80 × 10-4 | 5.70 × 10-3 | 5.00 × 10-8 | PRSS16 | 37074 |
rs3800318*†| 27371620 | 8.80 × 10-4 | 2.80 × 10-3 | 2.30 × 10-3 | 6.40 × 10-8 | PRSS16 | 39391 |
rs16897515* | 27385999 | 6.40 × 10-4 | 1.22 × 10-2 | 2.16 × 10-3 | 1.83 × 10-7 | DKFZp686G2037 | 47582 |
rs13195040* | 27521903 | 3.00 × 10-5 | 1.04 × 10-1 | 2.82 × 10-3 | 2.50 × 10-7 | ZNF184 | 4603 |
rs10484399* | 27642507 | 8.58 × 10-6 | 1.09 × 10-1 | 8.69 × 10-3 | 3.50 × 10-7 | ZNF184 | 93644 |
rs17693963* | 27818144 | 6.00 × 10-5 | 2.87 × 10-2 | 8.85 × 10-3 | 2.81 × 10-7 | BC035101 | 33229 |
rs7776351*†| 27834710 | 1.13 × 10-4 | 2.83 × 10-2 | 6.51 × 10-3 | 3.22 × 10-7 | HIST1H2BL | 48526 |
rs12182446* | 27853717 | 7.17 × 10-5 | 2.99 × 10-2 | 1.22 × 10-2 | 4.77 × 10-7 | HIST1H2BL | 29519 |
rs149990 | 28106237 | 5.00 × 10-4 | 3.80 × 10-1 | 2.60 × 10-3 | 2.60 × 10-5 | ZNF165 | 48314 |
rs13211507 | 28365356 | 2.60 × 10-4 | 1.30 × 10-1 | 2.70 × 10-3 | 5.20 × 10-6 | PGBD1 | 0 |
rs3130375¶ | 30429711 | 3.66 × 10-7 | 8.60 × 10-2 | 1.40 × 10-1 | - | RPP21 | 7100 |
rs3130544 | 31166319 | 1.30 × 10-2 | 3.80 × 10-1 | 3.30 × 10-4 | 8.20 × 10-5 | C6orf15 | 20660 |
rs3815087 | 31201566 | 7.70 × 10-2 | 2.20 × 10-1 | 1.30 × 10-4 | 6.70 × 10-5 | PSORS1C1 | 0 |
rs3131296# | 32280971 | 1.30 × 10-3 | 1.40 × 10-1 | 1.10 × 10-3 | 9.80 × 10-6 | NOTCH4 | 0 |
rs2076537 | 32425613 | 1.20 × 10-2 | - | 1.60 × 10-3 | 5.50 × 10-5 | C6orf10 | 0 |
rs9272219†| 32710247 | 2.20 × 10-5 | 1.30 × 10-2 | 1.00 × 10-2 | 6.90 × 10-8 | HLA-DQA1 | 2914 |
rs9272535†| 32714734 | 2.50 × 10-5 | 1.60 × 10-2 | 9.90 × 10-3 | 8.90 × 10-8 | HLA-DQA1 | 0 |