Skip to main content

Table 5 Statistics of the alignments of reads onto the reference genomes

From: Assisted assembly: how to improve a de novo genome assembly by using related species

 

Assisted on

Reads aligning target uniquely

Valid pairs aligning target uniquely

Plasmodium falciparum HB3

Plasmodium falciparum 3D7

79.1%

74.3%

Canis familiaris - 2× assembly

Homo sapiens

64.1%

35.1%

Loxodonta africana

Homo sapiens

51.1%

22.7%

Oryctolagus cuniculus

Homo sapiens

55.3%

25.2%

Otolemur garnetti

Homo sapiens

68.8%

38.0%

Cavia porcellus

Homo sapiens

47.8%

18.5%

Loxodonta africana

Canis familiaris

49.3%

28.8%

Oryctolagus cuniculus

Canis familiaris

48.8%

29.8%

Otolemur garnetti

Canis familiaris

59.6%

43.9%

Cavia porcellus

Canis familiaris

41.6%

22.4%

  1. The projects from the Mammal24 set were assisted against both human and canine references.