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Table 5 Statistics of the alignments of reads onto the reference genomes

From: Assisted assembly: how to improve a de novo genome assembly by using related species

  Assisted on Reads aligning target uniquely Valid pairs aligning target uniquely
Plasmodium falciparum HB3 Plasmodium falciparum 3D7 79.1% 74.3%
Canis familiaris - 2× assembly Homo sapiens 64.1% 35.1%
Loxodonta africana Homo sapiens 51.1% 22.7%
Oryctolagus cuniculus Homo sapiens 55.3% 25.2%
Otolemur garnetti Homo sapiens 68.8% 38.0%
Cavia porcellus Homo sapiens 47.8% 18.5%
Loxodonta africana Canis familiaris 49.3% 28.8%
Oryctolagus cuniculus Canis familiaris 48.8% 29.8%
Otolemur garnetti Canis familiaris 59.6% 43.9%
Cavia porcellus Canis familiaris 41.6% 22.4%
  1. The projects from the Mammal24 set were assisted against both human and canine references.