Community-wide analysis of microbial genome sequence signatures

Table 1 Deeply sampled composite genomes from Iron Mountain community genomic datasets used in binning analysis

Composite genome	Sample(s)	Sequence (Mb)	Coverage*	G+C content	Reference
I-plasma^†	UBA, UBA BS	1.69	20×	44	This study
E-plasma	UBA, UBA BS	1.58	9×	38	This study
A-plasma	UBA, UBA BS, UBA filtrate	1.94	8×	46	This study
G-plasma	5-way, UBA	1.78	8×	38	This study
Leptospirillum group II^†	UBA	2.64	25×	55	[55]
Leptospirillum group II^‡	5-way	2.72	20×	55	[9]
Leptospirillum group III^†	UBA	2.82	10×	58	[56]
Ferroplasma acidarmanus fer1^†	5-way	1.94	NA	37	[8]
Ferroplasma fer1(env)	5-way	1.46	4.5×	36	[8]
Ferroplasma fer2(env)	5-way	1.82	10×	37	[10]
ARMAN-2^†	UBA, UBA BS	1.0	15×	47	Baker et al., submitted
ARMAN-4	UBA filtrate	0.81	8×	35	Baker et al., submitted
ARMAN-5	UBA filtrate	0.90	8×	35	Baker et al., submitted
Viral genomes	UBA, UBA BS	Variable	Variable	Variable	[12]

*Estimated sequence coverage (read depth). ^†Genomes used for evaluation of binning performance on variable length fragments. ^‡The Leptospirillum group II 5-way genome was included in some ESOM binning and was indistinguishable from the Leptospirillum group II UBA genome, but is not shown in Figure 2. NA, not applicable.

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