| | BovineSNP50 | MAQ calls | Concordant calls |
|---|
Homozygote reference | 22,999 | | |
Homozygote variant | 12,043 | 8,974 (74.51%) | 8,949 (99.72%) |
Heterozygote | 13,683 | 5,882 (42.98%) | 4,157 (70.67%) |
- Comparison of the SNP calls made from genotype data and the sequence: concordant calls. Genotype data were generated using the Infinium BovineSNP50 BeadChip. Homozygote reference denotes an array-based genotype that is homozygous for the reference allele. Homozygote variant denotes an array-based genotype that is homozygous for a non-reference allele. Heterozygote denotes a heterozygous array-based genotype containing one reference allele and a variant allele.
