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Table 2 List of 12 linked sets involving the duplication of more than one gene locus in S. cerevisiae with K S < 0.35

From: Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans

Linked set Paralogous set A Paralogous set B K S Average K S Structural categories Chromosomal location Duplication span (bp)
1 YLR154C-H YLR157C-C 0.0000 0.0000 Complete XII/XII 7,167
  YLR155C YLR158C 0.0000   Complete   
  YLR156W YLR159W 0.0000   Complete   
  YLR156C-A YLR159C-A 0.0000   Complete   
  YLR157C YLR160C 0.0000   Complete   
  YLR157W-D YLR161W 0.0000   Partial   
2 YHR053C YHR055C 0.0000 0.0000 Complete VIII/VIII 1,816
  YHR054C YHR056C 0.0000   Partial   
3 YCL065W YCR041W - 0.0019 Chimeric III/III 2,509
  YCL066W YCR040W 0.0000   Complete   
  YCL067C YCR039C 0.0000   Complete   
  YCL068C YCR038C 0.0058   Chimeric   
4 YNL033W YNL019C 0.0000 0.0077 Complete XIV/XIV 4,247
  YNL034W YNL018C 0.0450   Complete   
5 YAR073W/75W YHR216W 0.1074 0.0087 Complete I/VIII 7,445
  YAR071W YHR215W 0.0069   Complete   
  YAR070C YHR214C-B 0.0000   Complete   
  YAR069C YHR214C-D 0.0000   Complete   
6* YKR106W YCL073C 0.0359 0.0243 Complete XI/III 6,928
  YKR105C YCL069W 0.0127   Complete   
7 YDR543C YER188C 0.0608 0.0377 Complete IV/V 7,481
  YDR545W YER189W 0.0147   Complete   
8 YJR162C YNL337W 0.0000 0.0409 Complete X/IV 2,916
  YJR161C YNL336W 0.0818     
9 YCR107W/AAD3 YOL165C 0.0430 0.0430 Complete III/XV 5,952
  YCR108C YOL166W -   Complete   
10 YAR050W YHR211W 0.3081 0.0449 Complete I/VIII 19,614
  YAR060C YHR212C 0.0000   Complete   
  YAR061W YHR212W-A 0.0000   Complete   
  YAR062W YHR213W 0.0000   Complete   
  YAR064W YHR213W-B 0.0000   Complete   
  YAR066W YHR214W 0.0066   Complete   
  YAR068W YHR214W-A 0.0000   Complete   
11 YNR073C YEL070W 0.0482 0.0817 Complete XIVI/V 4,611
  YNR072C YEL069C 0.1152   Complete   
12 YAR033W YGL051W 0.0280 0.0973 Complete I/VII 6,461
  YAR031W YGL053W 0.1667   Complete   
  1. Columns 2 and 3 list the systematic names of the group of loci representing each paralogous set as per the Saccharomyces Genome Database. Column 4 lists the synonymous-site divergence (K S ) between two paralogs within a linked set as computed by the Nei and Gojobori method with a correction for multiple hits. Column 5 presents the averaged K S value for all paralogous pairs within a linked set. Column 6 lists the particular category of structural resemblance (complete, partial or chimeric) for each duplicate pair. Column 7 lists the chromosomal location of paralogs 1 and 2, respectively. Column 8 provides a minimal estimate of the length of the duplicated region, based on current visual inspection of the extent of sequence homology across the paralogs' coding and flanking regions. *A linked set that has been classified as an ohnolog resulting from a WGD event. Dashes indicate an inability to compute synonymous divergence between the paralogs due to an altered reading frame in one or both gene copies.