Table 1 Aggregated amino acid substitution analysis results
From: Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses
Gene 1 | Gene 2 | Outgroup | Alignment length | Alignment length without gaps | Average identity | Overall substitution number in gene 1 | Overall substitution number in gene 2 | P-value |
|---|---|---|---|---|---|---|---|---|
PEPC | ||||||||
Sb10g021330 | Os02g0244700 | Os01g0758300 | 972 | 958 | 0.76 | 110 | 26 | 5.89E-13 |
Zm_NM_00111968 | Os02g0244700 | Os01g0758300 | 971 | 968 | 0.78 | 92 | 33 | 1.31E-07 |
Sb10g021330 | Os02g0244700 | Sb03g035090 | 972 | 958 | 0.76 | 117 | 28 | 1.46E-13 |
Zm_NM_00111968 | Os02g0244700 | Sb03g035090 | 971 | 968 | 0.77 | 104 | 34 | 2.54E-09 |
PPCK | ||||||||
Sb04g036570 | Os02g0807000 | Sb06g022690 | 309 | 284 | 0.65 | 15 | 14 | 8.53E-01 |
Zm_NM_001112338 | Os02g0807000 | Sb06g022690 | 309 | 281 | 0.63 | 18 | 11 | 1.94E-01 |
CA | ||||||||
U08403_FU3 | Os01g0639900 | Sb03g029190.1 | 272 | 201 | 0.75 | 19 | 18 | 8.69E-01 |
U08403_FU2 | Os01g0639900 | Sb03g029190.1 | 273 | 200 | 0.73 | 20 | 18 | 7.46E-01 |
U08403_FU1 | Os01g0639900 | Sb03g029190.1 | 273 | 202 | 0.79 | 13 | 18 | 3.69E-01 |
U08401_FU2 | Os01g0639900 | Sb03g029190.1 | 272 | 201 | 0.75 | 18 | 18 | 1.00E+00 |
U08401_FU1 | Os01g0639900 | Sb03g029190.1 | 273 | 202 | 0.78 | 14 | 18 | 4.80E-01 |
Sb03g029170_FU2 | Os01g0639900 | Sb03g029190.1 | 272 | 201 | 0.78 | 14 | 16 | 7.15E-01 |
Sb03g029170_FU1 | Os01g0639900 | Sb03g029190.1 | 273 | 201 | 0.80 | 11 | 20 | 1.06E-01 |
Sb03g029180 | Os01g0639900 | Sb03g029190.1 | 274 | 202 | 0.80 | 11 | 19 | 1.44E-01 |
U08403_FU3 | Os01g0639900 | At_NM_111016 | 293 | 201 | 0.50 | 14 | 13 | 8.47E-01 |
U08403_FU2 | Os01g0639900 | At_NM_111016 | 293 | 200 | 0.49 | 16 | 14 | 7.15E-01 |
U08403_FU1 | Os01g0639900 | At_NM_111016 | 293 | 202 | 0.50 | 10 | 15 | 3.17E-01 |
U08401_FU2 | Os01g0639900 | At_NM_111016 | 293 | 201 | 0.50 | 12 | 13 | 8.41E-01 |
U08401_FU1 | Os01g0639900 | At_NM_111016 | 293 | 202 | 0.50 | 11 | 15 | 4.33E-01 |
Sb03g029170_FU2 | Os01g0639900 | At_NM_111016 | 293 | 201 | 0.50 | 10 | 10 | 1.00E+00 |
Sb03g029170_FU1 | Os01g0639900 | At_NM_111016 | 293 | 201 | 0.50 | 9 | 14 | 2.97E-01 |
Sb03g029180 | Os01g0639900 | At_NM_111016 | 293 | 202 | 0.50 | 8 | 11 | 4.91E-01 |
PPDK | ||||||||
Sb09g019930 | Os05g0405000 | Os03g0432100 | 949 | 946 | 0.83 | 42 | 28 | 9.43E-02 |
Zm_NM_001112268 | Os05g0405000 | Os03g0432100 | 950 | 944 | 0.83 | 44 | 28 | 5.93E-02 |
Sb09g019930 | Os05g0405000 | Sb01g031660 | 958 | 946 | 0.76 | 37 | 15 | 2.28E-03 |
Zm_NM_001112268 | Os05g0405000 | Sb01g031660 | 961 | 942 | 0.78 | 32 | 18 | 4.77E-02 |
NADP-MDH | Â | Â | Â | Â | Â | Â | Â | Â |
Sb07g023920 | Os08g0562100 | At_NM_180883 | 443 | 427 | 0.77 | 22 | 19 | 6.39E-01 |
Sb07g023910 | Os08g0562100 | At_NM_180883 | 443 | 432 | 0.75 | 25 | 16 | 1.60E-01 |
ZM_X16084 | Os08g0562100 | At_NM_180883 | 443 | 430 | 0.75 | 25 | 13 | 5.16E-02 |
NADP-ME | ||||||||
Sb03g003230 | Os01g0188400 | Os05g0186300 | 642 | 633 | 0.80 | 46 | 16 | 1.39E-04 |
Sb03g003230 | Os01g0188400 | Sb09g005810 | 642 | 633 | 0.80 | 41 | 20 | 7.17E-03 |
Sb03g003220 | Os01g0188400 | Os05g0186300 | 650 | 635 | 0.84 | 23 | 15 | 1.94E-01 |
ZM_NM_001111843 | Os01g0188400 | Os05g0186300 | 641 | 634 | 0.80 | 47 | 16 | 9.40E-05 |
ZM_NM_001111913 | Os01g0188400 | Os05g0186300 | 668 | 633 | 0.84 | 26 | 15 | 8.58E-02 |
PPDK-RP | ||||||||
Sb02g035190 | Os07g0530600 | At4g21210 | 474 | 426 | 0.58 | 37 | 17 | 6.00E-03 |
Zm_NM_001112403 | Os07g0530600 | At4g21210 | 474 | 423 | 0.57 | 33 | 23 | 1.80E-01 |
Sb02g035190 | Sb02g035200 | Os07g0530600 | 476 | 408 | 0.69 | 19 | 22 | 6.40E-01 |
Sb02g035190 | Sb02g035210 | Os07g0530600 | 483 | 384 | 0.69 | 21 | 22 | 8.70E-01 |
Zm_NM_001112403 | Sb02g035200 | Os07g0530600 | 472 | 416 | 0.67 | 25 | 22 | 6.60E-01 |
Zm_NM_001112403 | Sb02g035210 | Os07g0530600 | 482 | 389 | 0.68 | 25 | 25 | 1.00E+00 |