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Table 1 Comparison of microarray and RT-qPCR results for genes changing expression

From: Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

ID

Genome ID

Name

r

Function

CL4038Contig1

[Esi0355_0025]

HSP70

0.87

HSP70

LQ0AAB7YD09FM1.SCF

[Esi0155_0065]

NADH

0.94

NADH dehydrogenase

CL7513Contig1

[Esi0269_0011]

ProDH

0.79

Proline dehydrogenase

CL3741Contig1

[Esi0024_0066]

TF

0.90

Putative transcription factor

LQ0AAB12YN05FM1.SCF

[Esi0399_0008]

WD_rep

0.66

WD repeat gene

CL1Contig3

[Esi0085_0055]

CLB1

0.95

Chlorophyll binding protein

CL43Contig1

[Esi0199_0054]

CLB2

0.98

Fucoxanthin binding protein

CL7742Contig1

[Esi0026_0055]

TagS

0.69

TAG synthase

CL2765Contig1

[Esi0526_0006]

NH4-Tr

0.96

Ammonium transporter

CL3832Contig1

[Esi0437_0012]

FOR

0.67

Phycoerythrobilin:ferredoxin oxidoreductase

LQ0AAA16YN10FM1.SCF

[Esi0153_0004]

Arg-MetTr

0.71

Arginine N-methyltransferase

CL7099Contig1

[Esi0018_0111]

HSD

0.83

Homoserine dehydrogenase

CL6576Contig1

[Esi0107_0059]

IGPS

0.97

Indole-3-glycerol-phosphate synthase

CL7231Contig1

[Esi0686_0001]

CDPK

0.85

cAMP-dependent protein kinase

CL4027Contig1

[Esi0122_0054]

mGST

-0.48

Microsomal glutathione S-transferase

CL4274Contig1

[Esi0023_0183]

SNR

0.57

SNR (vesicular transport)

CL5850Contig1

[Esi0109_0088]

mG

0.99

Glycin-rich protein

CL455Contig1

[Esi0159_0021]

G6PD

0.91

Glucose-6-phosphate 1-dehydrogenase

CL6746Contig1

[Esi0116_0065]

IF4E

0.91

Eukaryotic initiation factor 4E

  1. R is the Pearson correlation coefficient between the microarray and the RT-qPCR expression profile. ID corresponds to the name of the sequence on the array.
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Genome Biology

ISSN: 1474-760X

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