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Table 1 General information of analyzed genomes, newly identified CAGs and ORFans

From: A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes

Analyzed genomes

 

   Number of genomes

119

   Number of ORFs

351,111

   Number of atypical ORFs

58,487 (16% of all genes)

   Number of CAGs

2,377

   Number of ORFs in CAGs

47,441 (13% of all genes)

Newly identified CAGs

 

   Number of CAGs

2,104

   CAGs of likely plasmid origin

674 (32%)

   CAGs of likely virus origin

164 (8%)

   CAGs of likely viruse and plasmid origin

341 (16%)

   CAGs likely from cellular sources

145 (7%)

   CAGs unclassified

780 (37%)

ORFans

 

   Number of ORFans

8,987

   Number of ORFans in CAGs

3,475 (39%)

   ORFans in annotated proviruses and CAGs of likely virus origin

875 (25.1% of all ORFans inside CAGs)

   Number of ORFans in CAGs of likely plasmid origin

680 (19.5% of all ORFans inside CAGs)

   Number of ORFans in CAGs of likely virus and plasmid origin

224 (6.4% of all ORFans inside CAGs)

   Number of ORFans in CAGs likely from cellular sources

54 (1.5% of all ORFans inside CAGs)

   Number of ORFans in unclassified CAGs

1,642 (47.5% of all ORFans inside CAGs)