Table 3 Identifiable domains most frequently associated with tandem amino acid repeat types
From: Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins
Repeat type | Associated domain | Domain code | Number of hits | % of repeats |
|---|---|---|---|---|
L | Signal peptide | signalp | 111 | 55.2 |
S | Protein kinase-like (PK-like) | SSF56112 | 16 | 6.6 |
P | Protein kinase-like (PK-like) | SSF56112 | 11 | 3.8 |
Q | Quinoprotein alcohol dehydrogenase-like | SSF50998 | 5 | 3.6 |
A | Signal peptide | signalp | 10 | 3.4 |
A | Transmembrane regions | tmhmm | 10 | 3.4 |
E | WD40-repeat | SSF50978 | 9 | 3.0 |
G | Signal peptide | signalp | 5 | 2.4 |