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Table 4 Genes under selection identified by dN/dS analysis in TgCkUg2

From: Whole genome sequencing of a natural recombinant Toxoplasma gondiistrain reveals chromosome sorting and local allelic variants

Chromosome (type*) Comparator Gene ID (v4.3) Protein description dN/dS ratio P-value
Ia (III) Me49 (II) 83.m02145 Rhoptry kinase ROP4/ROP7 Infinity 0.025 <P < 0.050
IV (II) VEG (III) 641.m01516 Hypothetical Infinity 0.005 <P < 0.010
V (III) Me49 (II) 39.m00623 Proline-rich protein Infinity 0.010 <P < 0.025
V (III) Me49 (II) 31.m01816 Iron-sulfur cluster assembly accessory protein, putative Infinity 0.010 <P < 0.025
V (III) Me49 (II) 76.m01544 Hypothetical Infinity 0.010 <P < 0.025
VI (II) VEG (III) 49.m03376 Hypothetical Infinity 0.025 <P < 0.050
VI (II) VEG (III) 49.m03382 Hypothetical Infinity 0.010 <P < 0.025
VI (II) VEG (III) 49.m03431 Hypothetical Infinity 0.010 <P < 0.025
VIII (III) Me49 (II) 59.m07776 Hypothetical Infinity 0.025 <P < 0.050
VIII (III) Me49 (II) 59.m03361 Transporter, major facilitator family domain containing 4.325 0.010 <P < 0.025
X (II) Me49 (II) 42.m07434 Hypothetical Infinity 0.010 <P < 0.025
X (II) VEG (III) 42.m03570 LytB domain-containing protein Infinity 0.025 <P < 0.050
X (II) VEG (III) 42.m00013 GRA3 Infinity 0.010 <P < 0.025
X (II) VEG (III) 46.m02909 Hypothetical Infinity 0.025 <P < 0.050
XII (III) Me49 (II) 551.m00237 Hypothetical Infinity 0.025 <P < 0.050
XII (III) Me49 (II) 145.m00337 Hypothetical 6.527 0.010 <P < 0.025
  1. *The chromosomal background genotype. The number of non-synonymous SNPs divided by the number of synonymous SNPs. In most cases, no synonymous SNPs were found, and this rate approaches infinity.