|
Number
|
Chromosome length (bp)
|
Number of reads*
|
Total contig length (bp)
|
Coverage by contigs
|
Average reads/kb
|
Type II SNPs* (Green†)
|
Type III SNPs‡ (Blue†)
|
Novel SNPs§ (Orange†)
|
Major SNP¶ density/kb
|
Minor SNP¥ density/kb
|
|---|
|
Ia
|
1,896,408
|
20,649
|
1,585,140
|
83.59%
|
13.03
|
2
|
128
|
7
|
0.067
|
0.005
|
|
Ib
|
1,956,324
|
20,583
|
1,639,876
|
83.82%
|
12.55
|
1
|
1,483
|
10
|
0.758
|
0.006
|
|
II
|
2,302,931
|
24,968
|
1,939,495
|
84.22%
|
12.87
|
4,370
|
73
|
52
|
1.898
|
0.054
|
|
III
|
2,470,845
|
26,771
|
2,060,909
|
83.41%
|
12.99
|
27
|
4,224
|
73
|
1.710
|
0.040
|
|
IV
|
2,576,468
|
27,510
|
2,150,897
|
83.48%
|
12.79
|
4,731
|
176
|
60
|
1.836
|
0.092
|
|
V
|
3,147,601
|
33,619
|
2,582,080
|
82.03%
|
13.02
|
54
|
5,725
|
26
|
1.819
|
0.025
|
|
VI
|
3,600,655
|
39,723
|
3,042,491
|
84.50%
|
13.06
|
1,985
|
168
|
99
|
0.551
|
0.074
|
|
VIIa
|
4,502,211
|
48,365
|
3,797,608
|
84.35%
|
12.74
|
8,663
|
79
|
56
|
1.924
|
0.030
|
|
VIIb
|
5,023,822
|
53,768
|
4,231,651
|
84.23%
|
12.71
|
62
|
5,530
|
41
|
1.101
|
0.021
|
|
VIII
|
6,923,375
|
75,308
|
5,851,305
|
84.52%
|
12.87
|
123
|
6,775
|
158
|
0.979
|
0.041
|
|
IX
|
6,384,456
|
72,298
|
5,337,365
|
83.60%
|
13.55
|
8,119
|
325
|
269
|
1.272
|
0.093
|
|
X
|
7,418,475
|
85,205
|
6,298,377
|
84.90%
|
13.53
|
13,459
|
236
|
209
|
1.814
|
0.060
|
|
XI
|
6,570,290
|
70,653
|
5,549,592
|
84.46%
|
12.73
|
49
|
60
|
117
|
-
|
0.034
|
|
XII
|
6,871,637
|
74,458
|
5,770,139
|
83.97%
|
12.90
|
58
|
4,809
|
75
|
0.700
|
0.019
|
|
Total
|
61,645,498
|
673,878
|
51,836,925
|
84.09%
|
13.00
|
41,703
|
29,791
|
1,252
|
1.264
|
0.042
|
- *SNPs denoting a type II background. TgCkUg2 is identical to Me49, but different from VEG. †The colors correspond to the colours used for the respective SNP types in Figures 1 and 2 and Additional data files 1 and 2. ‡SNPs denoting a type III background. TgCkUg2 is identical to VEG, but different from Me49. §SNPs where TgCkUg2 has a novel allele, different from both Me49 and VEG. ¶The predominant SNP type, corresponding to the chromosomal background type. ¥SNPs where TgCkUg2 differs from the background type, including novel SNPs.
