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Table 3 Characteristics of the intergenic repeat elements present in P. fluorescens SBW25, Pf0-1, and Pf-5

From: Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens

Repeat family

Size (bp)

G+C%

SBW25

Pf0-1

Pf-5

Structure

R0

89

59.81

612

36

-

IRs: 24 bp

R1

80

68.31

-

9

621

IRs: 30 bp

R2

110

66.52

516

-

4

IRs: 43 bp

R5

50

65.07

2

52

-

 

R6

177

59.09

-

50

-

IRs: 34 bp

R6-partial

120

59.61

-

9

-

-

R26

352

60.76

-

20

-

-

R30

120

58.47

4

15

-

-

R69

62

64.67

-

12

-

-

R87

58

68.94

-

-

106

-

R178

101

61.86

18

28

9

IRs: 11 bp (internal)

R200

320

60.25

47

-

8

-

Total elements

-

-

1,199

231

748

-

Inverted repeats*

      

   IR1_g

23-28

66.52

 

125

 

-

   IR1_g

21-28

64.7

922

  

-

   IR1_g

23-27

65.2

  

36

-

  1. * IRg_1 elements vary slightly in size, but all match closely with the consensus sequence and structure.