Table 1 Data content of the FANTOM web resource
From: The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation
Cell conditions and biological replicates | Type of experiments | Track names in the genome browser |
|---|---|---|
THP-1 differentiation time course × 3 | CAGE | TSS positions |
| Â | Â | Promoters |
| Â | Â | Promoter regions |
THP-1 differentiation time course × 3 | Illumina microarray | Illumina biological replicates |
THP-1 systematic perturbation (52 transcription factors knocked down with siRNA) × 3 | Illumina microarray | Illumina knock-down siRNA series |
THP-1 before and after differentiation × 2 | H3K9Ac ChIP-chip with whole genome tiling array | H3K9 by whole tiling array |
THP-1 before and after differentiation × 1 | RNA polymerase II ChIP-chip with whole genome tiling array | RNA polymerase II H3K9 by whole tiling array |
THP-1 before and after differentiation × 2 | PU.1 ChIP-chip with promoter tiling array | PU.1 promoter array |
THP-1 before and after differentiation × 2 | SP1 ChIP-chip with promoter tiling array | SP1 promoter array |
THP-1 differentiation time course × 1 | Small RNA sequencing | ShortRNA cluster, shortRNA sequence |
THP-1 differentiation time course × 2 | qRT-PCR for transcription factors | Transcription factor qRT-PCR |
Human 127 RNA samples (including the differentiation time courses) | CAGE | Tag cluster |
Mouse 206 RNA samples (including the differentiation time courses) | CAGE | Tag cluster |