Skip to main content

Table 2 Contents of the FANTOM4 instance of EdgeExpressDB: edges

From: FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

Edges

Source

Relationship

TF-promoter (L2)

Predictions (FANTOM4 [1])

Belongs to

Promoter (L2)-promoter region (L3)

FANTOM4 [1]

Belongs to

Promoter region (L3)-gene

FANTOM4 [1]

Belongs to

Promoter region (L3)-pre-miRNA

FANTOM4 [1]

Belongs to

Pre-miRNA-mature miRNA

FANTOM4 [1]

Belongs to

miRNA-target

ElMMo (SIB) [10]

Interaction

Protein-protein

Published

Interaction

TF-gene

Published

Interaction

TF-gene

ChIP-chip

Interaction

TF-gene (perturbation edge)

siRNA knockdown

Interaction

miRNA-target (perturbation edge)

miRNA overexpression

Interaction

  1. TF, transcription factor.