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Table 2 Contents of the FANTOM4 instance of EdgeExpressDB: edges

From: FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

Edges Source Relationship
TF-promoter (L2) Predictions (FANTOM4 [1]) Belongs to
Promoter (L2)-promoter region (L3) FANTOM4 [1] Belongs to
Promoter region (L3)-gene FANTOM4 [1] Belongs to
Promoter region (L3)-pre-miRNA FANTOM4 [1] Belongs to
Pre-miRNA-mature miRNA FANTOM4 [1] Belongs to
miRNA-target ElMMo (SIB) [10] Interaction
Protein-protein Published Interaction
TF-gene Published Interaction
TF-gene ChIP-chip Interaction
TF-gene (perturbation edge) siRNA knockdown Interaction
miRNA-target (perturbation edge) miRNA overexpression Interaction
  1. TF, transcription factor.